UFO06563.5prime Sequence
1116 bp (1022 high quality bases) assembled on 2009-08-18
> UFO06563.5prime
CAGTCGACATGGATTTCAGCACACACCGCCTGACCACTTTGCTGCTCCTC
CTCCTGGCCACAGTTGCCCTGGGAAATGCCCAAAGCAGTCAGCTCACCGT
CGATTCCCATGACATCACCGTTCTGCTGAACAGCAACGAGACTTTTCTGG
TGTTCGCCAACGGATTGCTAGACAGCGACGTGGAAGTTGCGCTGGGAACA
GATTCGGAGGATCATTTGCTCCTCGATCCCGCAACGTTTGTGTATCCAGC
GGGCAGTACTCGAAATCAGTCGGTGGTGATAACTGGCCTCAAAGCCGGCA
ACGTCAAAGTGGTCGCAGATAGCGATGATGCGAACAAAGAGATTGTGAAG
GATGTGTTCGTACGCGTGACTGTGGCCAAATCGAGAGCTTTGATCTACAC
CTCCATCATCTTTGGCTGGGTTTACTTTGTGGCCTGGTCGGTGTCCTTCT
ATCCGCAGATCTGGAGCAACTATCGCCGCAAGTCCGTCGAGGGACTGAAC
TTTGATTTCCTGGCCCTCAATATCGTGGGCTTCACCCTGTACAGCATGTT
CAACTGCGGCCTCTATTTCATCGAGGATCTGCAGAACGAGTACGAGGTGC
GATATCCGCTGGGAGTGAATCCTGTGATGCTCAACGACGTGGTCTTCTCA
CTGCATGCCATGTTCGCCACCTGCATTACGATCCTTCAGTGCTTTTTCTA
TCAGAGAGCACAGCAAAGGGTGTCGTTCATTGCCTACGGAATATTGGCCA
TCTTCGCCGTGGTGGTCGTCGTGTCTGCCGGTTTGGCCGGAGGATCCGTC
ATCCATTGGCTGGACTTTCTGTACTACTGCAGTTACGTCAAGCTAACCAT
TACCATCATCAAGTACGTGCCGCAAGCTCTGATGACTATCGCCGGAGAGC
ACCTCGGCTGGAGCATCGGCAACATTCTGCTGGATTTCACGGGAGACGCT
GAGCATGCTGCAATGATCTGATGCTCATATACGATGATGGGTGTCGATTT
CGGTGATCCACCAAATCGACTGGGTCTGTTTCTGCTCTCGATGTGTCTTC
ATGCTGCACACTATGGTTTACAGCATCAAGGATCCCGGCTTGACCTCACA
CGGACAGGTTCAATCG
UFO06563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17119-RC | 1455 | CG17119-RC | 149..1226 | 9..1065 | 4895 | 98.1 | Plus |
| CG17119-RA | 1495 | CG17119-RA | 189..1266 | 9..1065 | 4895 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23055363..23055723 | 704..344 | 1805 | 100 | Minus |
| 3R | 32079331 | 3R | 23054913..23055179 | 963..702 | 1120 | 98.1 | Minus |
| 3R | 32079331 | 3R | 23055789..23055971 | 343..161 | 915 | 100 | Minus |
| 3R | 32079331 | 3R | 23056042..23056151 | 160..51 | 535 | 99.1 | Minus |
| 3R | 32079331 | 3R | 23056199..23056253 | 63..9 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:22 has no hits.
UFO06563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:52 Download gff for
UFO06563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17119-RB | 180..1275 | 1..1073 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:58 Download gff for
UFO06563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17119-RA | 181..1280 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:50 Download gff for
UFO06563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17119-RA | 181..1280 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:50 Download gff for
UFO06563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23054888..23055176 | 705..983 | 96 | <- | Minus |
| 3R | 23055363..23055723 | 344..704 | 100 | <- | Minus |
| 3R | 23055789..23055971 | 161..343 | 100 | <- | Minus |
| 3R | 23056042..23056138 | 64..160 | 100 | <- | Minus |
| 3R | 23056199..23056257 | 1..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:58 Download gff for
UFO06563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18880610..18880898 | 705..983 | 96 | <- | Minus |
| arm_3R | 18881085..18881445 | 344..704 | 100 | <- | Minus |
| arm_3R | 18881511..18881693 | 161..343 | 100 | <- | Minus |
| arm_3R | 18881764..18881860 | 64..160 | 100 | <- | Minus |
| arm_3R | 18881921..18881979 | 1..63 | 93 | | Minus |
