UFO06566.5prime Sequence
1113 bp (1030 high quality bases) assembled on 2009-08-18
> UFO06566.5prime
CAGTCGACATGCATAAATGTGCTATATTTCTTCTACTGGCTTTAAGTTGC
CAGCAAATTCAAGCCGAATTGACGGCCGCCGACTGCCGGGCGTTGGGTTT
TATTAAGGCCCAGTTAATGTGTTCCAGTTGCGAAAAACTGGATGATTTCG
GATTGGATACCATCAAGCCTCAGTGTAAGCAATGCTGCACTTTGGATCAG
CAGCCGGCGGCACAGCGGACATATGCCAAGGCAATTCTGGAGGTGTGCAC
CTGCAAATTCCGGGCCTATCCGCAGATTCAGGCCTTTATTCAAAGCGGCC
GACCTGCCAAGTTCCCCAACCTGCAGATCAAATACGTAAGAGGACTGGAT
CCCGTGGTTAAGCTCCTAGATGCCAGTGGCAAAGTGCAGGAGACGTTGTC
CATAACCAAGTGGAACACAGACACTGTCGAGGAGTTCTTCGAAACGCATC
TGGCCAAGGATGGTGCCGGCAAGAATTCGTACAGCGTGGTGGAGGATGCC
GATGGAGATGACGATGAAGATTACCTGCGAACCAACAGGATCGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATATATTTGCCCATGGTGAAAACGGGGCGAAGAGTTGTCCATATGC
ACGTTAAATCAAACTGGTGAACTCACCAGGATGCTGAGACGAAAACATAT
TTCTCATAACCCTTTAGGAAATAGCAGTTTCACGTAACACGCCCATCTGC
CGAATATATGTGTAGAACTGCGAATCGTCTGCATTCACTCCGAAGCGAGA
CGTTCAGTGCTGA
UFO06566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7484-RB | 657 | CG7484-RB | 72..605 | 9..542 | 2670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17655214..17655593 | 163..542 | 1885 | 99.7 | Plus |
| 3L | 28110227 | 3L | 17654782..17654901 | 48..167 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 17654688..17654726 | 9..47 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:13 has no hits.
UFO06566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:51 Download gff for
UFO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7484-RB | 58..594 | 9..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:10 Download gff for
UFO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7484-RB | 72..608 | 9..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:02 Download gff for
UFO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7484-RB | 72..608 | 9..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:02 Download gff for
UFO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17654688..17654726 | 9..47 | 100 | -> | Plus |
| 3L | 17654782..17654900 | 48..166 | 100 | -> | Plus |
| 3L | 17655218..17655593 | 167..542 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:10 Download gff for
UFO06566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17647788..17647826 | 9..47 | 100 | -> | Plus |
| arm_3L | 17647882..17648000 | 48..166 | 100 | -> | Plus |
| arm_3L | 17648318..17648693 | 167..542 | 100 | == | Plus |
