UFO06568.5prime Sequence
1118 bp (1020 high quality bases) assembled on 2009-08-18
> UFO06568.5prime
CAGTCGACATGCCGGCATTTCACTCGGAAATAGAGGATTTCCAAGCCTCG
GTGGGGAATATGGCCCTTCTACCACTACGTACCCAAGTCCGAGGACCAGC
GCCCACTGTTGATATTCCCAACGACATCATCGATGAGTCACTCTACTTCT
GGAAATCGAACATTTTCTTCCGCACTTACGAAGTTAAGTCGGAGGTGGAC
AGGGTGCTCATCTACATAACGCTCTACATCACGGAATGTTTGAAGCGATT
GGCCCGATGCACAAGCAAATCGCAGGGTCAGCAGGAGCTCTATACGCTGG
CCATCTCGCGGTTCGATATACCCGGAGATGCGGGATTTCCGCTGAACGGA
ATATACACCAAGCCCGAGGATCCGGAGCTGATGCGTCAGTACTTCCTGCA
GTTGCGCCAGGAAACCGGAAACAGATTGCTGGAAAAGGTCTTCGATACTC
CGGATGGAAAGCCGAGCAAGTGGTGGATATGCTTTGCCAAGAAGAAGTTC
ATGGAGAAGAGTCTTTCGGGACCGGGAATGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATT
TGCCCATGGTGAAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAA
ATCAAACTGGTGAAACTCCACCCAGGATTGGCTGAAACGAAAAACATATT
CCTCAATAAACCCTTAGGAAATAGCCAGTTTCACCGTAACACGCCCCCAT
CTTGGAAATATATGTGTAGAACTGCCGAATCGTCTGAATCACTCGAACGA
TAAACGTTCATTTTGTTC
UFO06568.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3B-RA | 673 | CG8936-RA | 78..599 | 9..530 | 2595 | 99.8 | Plus |
| Arpc3B-RC | 693 | CG8936-RC | 103..619 | 14..530 | 2570 | 99.8 | Plus |
| Arpc3B-RB | 783 | CG8936-RB | 193..709 | 14..530 | 2570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17104645..17104988 | 530..187 | 1705 | 99.7 | Minus |
| X | 23542271 | X | 17105483..17105657 | 188..14 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 15835384..15835544 | 367..527 | 325 | 80.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:05 has no hits.
UFO06568.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:49 Download gff for
UFO06568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3B-RA | 71..602 | 1..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:48 Download gff for
UFO06568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3B-RA | 71..602 | 1..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:14 Download gff for
UFO06568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3B-RA | 71..602 | 1..534 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:14 Download gff for
UFO06568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17105483..17105664 | 4..188 | 97 | | Minus |
| X | 17104645..17104986 | 189..530 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:48 Download gff for
UFO06568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16998678..16999019 | 189..530 | 99 | <- | Minus |
| arm_X | 16999516..16999697 | 4..188 | 97 | | Minus |
