UFO06570.5prime Sequence
1116 bp (1009 high quality bases) assembled on 2009-08-18
> UFO06570.5prime
CAGTCGACATGACGGAATTCGATTTTGTGCCACTCGCCGTGGGTGTGGTA
GCCGTACTCGCCGGCGCCCTGATCGTCCACTATCTGCTGAATAAGAAGTC
CACGAAACCACGCCGGGAACCCAATCGCACCGCTCGGCTGCGCACACTTG
TGGATCCCAATGACAAGTACCTGCTGCCTCTCATCGAAAAGGAGAATCTG
AGCCATGACACTAGGAGATTCCGGTTTGGATTGCCCTCCAAGCAGCATGT
CCTTGGCCTGCCCGTTGGCCAGCACATTCATCTGATCGCCACCATCGACA
ATGAGCTAATAATTCGGCCATACACTCCTATATCGTCTGATGAGGATGTG
GGCTACGTGGACCTAGTCGTCAAGGTGTACTTCAAGGATTCGCATCCCAA
GTTCCCGGCCGGCGGCAAAATGACACAACACCTGGAGCAGCTCGAGTTGG
GGGACAAGATCTCGTTCCGTGGTCCCTCGGGTAGGCTACAATATCTCGGC
AATGGCACCTTCTCCATCAAAAAGTTGCGCAAGGATCCTCCAAAGCACGT
GACCGCCAAGCGGGTCAACATGATTGCCGGCGGCACTGGCATTACTCCAA
TGCTTCAATTGGCCAGGGAAGTTCTCAAGCGCAGCGATAAGGATAAGACT
GAACTGGCGTTGCTGTTCGCCAATCAGAGCGAAAAGGACATTCTACTGCG
TGCAGAGTTGGACGAACTGGCCCAGAAGCATCCTGACCAGTTCAAGATCT
GGTACACAGTCGACAAGGCAAACGAAGGTTGGCAGTATAGCGTTGGCTTC
ATCAATGAGGAAATGATCGCCGCCCACCTGCTTCCCGGCCAAGGACGATA
CCATTGTGTTGCTTTGCGGCCCACCACCAATGATTAACTTTGCCTGCATC
CGGCGCTGGACAGCTTGGCTACCATCCGGACACCCGTTTTGCCTACGCAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGTAGTGTCATAATCATA
TCATATCATATCATATCACACTAGCCTAGAGAATCCTGTCATGACTGTGC
TGATCCCACCAATAAAACCGCCGCGCAACGAACGTTCTGACAATTCCGAA
TGATCTGAGTCATACT
UFO06570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5946-RA | 1224 | CG5946-RA | 122..1060 | 9..946 | 4610 | 99.6 | Plus |
| CG5946-RF | 1460 | CG5946-RF | 371..1296 | 22..946 | 4545 | 99.6 | Plus |
| CG5946-RB | 1686 | CG5946-RB | 309..1234 | 22..946 | 4545 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11818254..11818907 | 677..24 | 3255 | 99.8 | Minus |
| 3L | 28110227 | 3L | 11817147..11817318 | 946..776 | 715 | 98.3 | Minus |
| 3L | 28110227 | 3L | 11818086..11818189 | 779..676 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:35 has no hits.
UFO06570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:56 Download gff for
UFO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RA | 115..1053 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:30 Download gff for
UFO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RA | 122..1060 | 9..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:48 Download gff for
UFO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5946-RA | 122..1060 | 9..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:48 Download gff for
UFO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11817147..11817316 | 778..946 | 98 | <- | Minus |
| 3L | 11818088..11818187 | 678..777 | 100 | <- | Minus |
| 3L | 11818254..11818907 | 24..677 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:30 Download gff for
UFO06570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11811354..11812007 | 24..677 | 99 | <- | Minus |
| arm_3L | 11810247..11810416 | 778..946 | 98 | <- | Minus |
| arm_3L | 11811188..11811287 | 678..777 | 100 | <- | Minus |
