UFO06571.5prime Sequence
1070 bp (968 high quality bases) assembled on 2009-08-18
> UFO06571.5prime
CAGTCGACATGCCCTTCTCCTCCTGCCGCACCATCGAGGAGCGCCTGACG
GAAGCCCAGAAGGCCGGACAGAAGGTGCCAGCCGACTACGCCAGTTACCT
GCAGAAGGCACTCTGCGGCGAGTTCAATGGAGTGCGCCACTTCTGCTGCC
CCTCAGCCAACATTCAGCACAACTCCAAGGTGATGAGCCTGTTCAAGGAC
GAAAACTTTGACTGCGGCAACTTCCTCAGCCAAAGAGTGTCCAATGGCTA
CGAGGTGAAGCTCTCCTCCAGACCCTGGATGGCCCTGCTCCGTTATCAGC
AGTTTGGAGAGTCCAGATTCCTTTGCGGCGGAGCTATGATATCCGAGCGC
TACATCCTGACTGCTGCTCACTGTGTCCACGGTCTTCAGAACGATCTTTA
TGAGATCCGGCTCGGCGAGCACCGCATCTCTACGGAGGAGGATTGCCGGC
AGCAGGGACGCAAGAAGAAATGTGCCCCGCCAGTTGTGAATGTGGGCATT
GAGAAGCATCTGATTCATGAGAAGTACGACGCCCGCCACATCATGCATGA
CATAGCTCTCCTGAAGCTCAACAGGAGCGTCCCCTTCCAGAAGCACATCA
AGCCCATTTGCCTGCCCATCACGGATGAGCTGAAGGAGAAGGCAGAGCAG
ATAAGCACCTACTTCGTGACCGGCTGGGGCACCACGGAGAACGGCTCGTC
GTCGGATGTGTTGCTCCAGGCGAACGTGCCGCTGCAGCCGCGATCCGCCT
GTTCCCAGGCCTACCGCAGGGCAGTGCCGCTCAGTCAACTTTGCGTGGGT
GGTGGCGACCTGCAGACTCCTGCAAGGGCGACTCCGGCGGCCCCTCCAAG
CACCTGCCCAGTACTTGGCGAGTATGCGCCGAAAATGGTCGAGTTCGGGA
TCGTCAGCCAGGTGTGGTCACTGCGGCAGATAGCCTGCCCGTCTGTACAC
AATGTGGGCGAGTACGTGCAGTGATCACGACACATGTAGCATGACTGCAG
CTTCTAGAACATCGTGGCCGCGGGCCAGTATGACTAATCTAACTATCTAT
CTAATCCAACTAGCCTAGGG
UFO06571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grass-RB | 1317 | CG5896-RB | 217..1198 | 8..979 | 4660 | 99 | Plus |
| grass-RA | 1391 | CG5896-RA | 291..1272 | 8..979 | 4660 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27159265..27159655 | 592..973 | 1505 | 97.7 | Plus |
| 3R | 32079331 | 3R | 27158630..27158845 | 134..349 | 1080 | 100 | Plus |
| 3R | 32079331 | 3R | 27159008..27159201 | 398..591 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 27158238..27158364 | 8..134 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 27158903..27158951 | 349..397 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:47:52 has no hits.
UFO06571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:55 Download gff for
UFO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RB | 214..1211 | 1..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:16 Download gff for
UFO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RA | 286..1283 | 1..990 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:44 Download gff for
UFO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grass-RA | 286..1283 | 1..990 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:44 Download gff for
UFO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27158233..27158364 | 1..134 | 98 | -> | Plus |
| 3R | 27158631..27158844 | 135..348 | 100 | -> | Plus |
| 3R | 27158903..27158951 | 349..397 | 100 | -> | Plus |
| 3R | 27159008..27159201 | 398..591 | 100 | -> | Plus |
| 3R | 27159265..27159673 | 592..990 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:16 Download gff for
UFO06571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22983955..22984086 | 1..134 | 98 | -> | Plus |
| arm_3R | 22984353..22984566 | 135..348 | 100 | -> | Plus |
| arm_3R | 22984625..22984673 | 349..397 | 100 | -> | Plus |
| arm_3R | 22984730..22984923 | 398..591 | 100 | -> | Plus |
| arm_3R | 22984987..22985395 | 592..990 | 96 | | Plus |
