UFO06573.5prime Sequence
1098 bp (989 high quality bases) assembled on 2009-08-18
> UFO06573.5prime
CAGTCGACATGAATTTTAGCCAACGCCAACCAGAATGGCACAGAATACCA
TCGGTGGCACTAAATCACATATTCGACTATCTAAATCCCCAGGATCGTCG
GTCGGCAGCGGGTGTATGTTTTTCTTGGAGACATGCCTTATTTCAAAAAC
GCTATTTTAGAAACTTTCGCTTTCAATTGGATGTGGGATGCGATGATCAG
TTGGCCTTCTTCCATCGCTCCATGGCCAACTTGGCCATGGAACTGATAGT
AGTCTTCGACTTTCAAAATGCAGTTCACATCCAGAAAATGCGAGGACTTC
TATACAAAGTGGCGCACTGTGATAACATCCAGAAATTGCGTTTCCAAACC
CACAATGTCGGCCTTGTTGCCATCGGAAACATGCATAGCGAGCACTTGTT
GGCCATCGAACAATGCTTTGTGGAGCCGTTGATTCTGTTTTTAAGCCGCA
AGCGTCAGCCCTGCCAGCTTCTGGACCTTGGAGCCATCGAGGCCCTCTCA
TACTATGGCCATGATTTTCTAAAGGCTATGGGAAAACCACAGGAACTGCT
GCAGCTGACACTCGCGAGCATCAAGTACGATCCTAGTCACTATCCCATCC
TCTCGTTGGACTCGACCCTGCTGCAGAAATGCGCCGCCCTGCAGGTGCTC
TCCCTCGACTACGACACACTTTCTGACGAACTGCTGCACACTATCCAGGT
GCTTCCGCTGCGGAAACTTTTGATCGCAGTGCACGGCCTGTATAGCGAAG
AGCATCCCGATGTGTCGGAGACGGCCTGGTCCAACTTTTCGGATCACTTT
TCGAGCATTGAGTTGGTGCTGACCCTTGTGTATGCCTATGAGGCCATCGC
ACTACTGCAGCATCGTGTGCTGCGTAGCAATATGCCTGTAACCCATGTGC
GACTGCTATCTGCGAAAGATGACGCCGAAGCCTTGGACTGATGTCGTGCA
TACAGGAAACTCTGCGCAGCATCACTATGTGACGCGCGTACAATATCATC
GCATGACTCAGTCGCGTGTCTCCTTTACTCAGAATCATCGTATGATGGCT
GGCGCTGCAACAGCCTGAGGAATCGTATGCACGTACTAGATGATCGTA
UFO06573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4911-RC | 4775 | CG4911-RC | 102..1200 | 9..1083 | 4800 | 97.3 | Plus |
| CG4911-RB | 2318 | CG4911-RB | 102..1200 | 9..1083 | 4800 | 97.3 | Plus |
| CG4911-RA | 2321 | CG4911-RA | 102..1200 | 9..1083 | 4800 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9070991..9071521 | 940..413 | 2490 | 99.2 | Minus |
| 3L | 28110227 | 3L | 9071746..9071902 | 307..151 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 9072488..9072630 | 151..9 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 9071583..9071691 | 412..304 | 530 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:47:37 has no hits.
UFO06573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:46 Download gff for
UFO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4911-RA | 94..1198 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:03 Download gff for
UFO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4911-RA | 96..1200 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:34 Download gff for
UFO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4911-RA | 96..1200 | 1..1083 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:34 Download gff for
UFO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9070827..9071521 | 413..1083 | 95 | <- | Minus |
| 3L | 9071583..9071687 | 308..412 | 100 | <- | Minus |
| 3L | 9071746..9071901 | 152..307 | 100 | <- | Minus |
| 3L | 9072488..9072634 | 1..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:03 Download gff for
UFO06573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9063927..9064621 | 413..1083 | 95 | <- | Minus |
| arm_3L | 9064683..9064787 | 308..412 | 100 | <- | Minus |
| arm_3L | 9064846..9065001 | 152..307 | 100 | <- | Minus |
| arm_3L | 9065588..9065734 | 1..151 | 97 | | Minus |
