UFO06577.5prime Sequence
1004 bp (799 high quality bases) assembled on 2009-08-18
> UFO06577.5prime
CAGTCGACATGCAGGCCAAAAAGCGTTATATTTTGGTCTTCGTTTCCTGC
GCTTTTTTGGCCTACGCCTATTTCGGTGGCTATCGCCTGAAAGTCTCACC
ATTGAAACCCCGTAGAGCCCAGCACGAATCGGCCAAGGATGGTGGAGTTC
AACCCCACGAGCAGTTGCCCAGCTTCCTGGGCGCCCACGATATGCAGGAA
CTCCAACTGCTGCAGAGCAATCAATCGAAGAGTTTGGATAGCTCCAAGCA
CCTGGTTACCCGCAAACCCGACTGCCGCATGGAGACCTGTTTCGATTTTA
CCCGCTGTTATGATCGCTTTTTGGTCTATATCTATCCACCGGAACCACTT
AACTCACTGGGCGCTGCCCCGCCCACCTCGGCCAACTATCAAAAGATACT
CACTGCCATCCAGGAATCGAGATATTATACCAGTGATCCCACGGCCGCCT
GTCTCTTTGTGCTCGGTATCGATACCCTGGATCGAGATTCCCTATCCGAG
GATTATGTTCGGAATGTGCCATCCAGATTGGCAAGATTGCCGTATTGGAA
CAATGGCAGGAACCACATTATCTTCAATCTGTACTCGGGCACTTGGCCGG
ATTACGCGGAGAACTCATTGGGTTTCGATGCGGGTGAGGCCATTTTGGCC
AAAGCCAGCATGGGAGTGCTCCAACTGCGACACGGTTTCGACGTCAGCAT
CCCGCTCTTCCACAAACAATTCCCGCTGAGGGCCGGCGCCACAGGAACCG
TGCAGTCCAACAATTTCCCCGCCAACAGAAGTATCTCGCTGGGCTTCCAA
GTAAAGCGATACGTGCATGTCATTGGCATCGTAACACGCATCTCGATTTT
CTCACTTTGTACAATGGATGCGACATGGCTCCTGCTCACCACTCGTCGCC
AGCGGACAGGTGGCGGGAGCTGCAGGAGAATCGCTGGCGACCAGGAGATC
CGTACTACAACGATTCCATGCGAGACCTTACCGTCCAAATTCCCGTTTCT
GCTT
UFO06577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttv-RB | 6899 | CG10117-RB | 926..1920 | 9..1004 | 4160 | 95.2 | Plus |
| ttv-RA | 3994 | CG10117-RA | 617..1611 | 9..1004 | 4160 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14527192..14527998 | 9..815 | 3835 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:47:17 has no hits.
UFO06577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:45 Download gff for
UFO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttv-RA | 616..1439 | 1..826 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:56 Download gff for
UFO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttv-RA | 611..1434 | 1..826 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:21 Download gff for
UFO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttv-RA | 611..1434 | 1..826 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:21 Download gff for
UFO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14527186..14528001 | 1..818 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:56 Download gff for
UFO06577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10414691..10415506 | 1..818 | 98 | == | Plus |
