UFO06578.5prime Sequence
865 bp (102 high quality bases) assembled on 2009-08-18
> UFO06578.5prime
CAATCCACATGATGATTCAAGAGCCCGTGCAGGCCGCCCTATGGCATTGC
CTGAACTACTACTACTTCAAGGATGCCGTTTTCCTGTCGGAACCCCTGTG
CTCACAAGTGGAGAGCGACGAGACGATATTCCTGCTGGCCACCATCTACT
TCCGCTCCAATCAGGTGCACCAGGCATATTGGCTGCTCAAGGATAAGGCA
CGCCGCTCGCCGCAGTGCCGCTTTCTGCAGGCCAAATGTGCCTACGAGCT
GAAAAAATACGCTGAGGCGGAGAGTGCCCTGATCTCCACGGGATTCGCGG
ACGCCAAAAACTGCCATGATCTGCAGCGGGACTTCGGGGATCTGGCCTGC
TTCCCCTATCATCTAATGGCCCAGATCTGCATGAGGACCGAGCGCAATAA
AGTGGCCGTTAGTGCTTTAAGGCGCGCCCTCAAACTGAACCCCTTCATGT
GGCACGCATTCACGGATCTGTGCCTGCTGGGCCAGGATACAGATGCGGCG
GCCATATTCCAAATCCACAGCACATATGTGTTCAATACCTGCCAGGGCAG
CTCGTACATGCCAATGCAATGGTGCTGATCAGAGCCGAGCAGCACGGTCA
ACACCATCATGAGCGCCTGTCGCTGATCACCAGCCTAGCCAATGTCTCCA
ACTACATTCTGACCACGCCCGTGGATCAGCAGCAACAACAGATCAACCAG
AATCATAACCAGCACCACTACAGCAAATGGTGACGCCCATCAGCAATAAT
AATAATAACAACAATCTCAATAGTTCGATCAGCATGCTGCGCGGGGGGTT
TGGTACAAAACTCCAGCATGCTCGCGATGCTGGAGGACACACCTATGCGA
GCTTCTGCAGGACCC
UFO06578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc27-RB | 3713 | CG8610-RB | 658..1516 | 7..865 | 3740 | 95.9 | Plus |
| Cdc27-RA | 3438 | CG8610-RA | 658..1516 | 7..865 | 3740 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7247689..7248436 | 853..107 | 3205 | 96.1 | Minus |
| 3L | 28110227 | 3L | 7248504..7248581 | 108..31 | 330 | 94.9 | Minus |
Blast to na_te.dros performed 2014-11-28 19:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6903 | 673..728 | 138 | 73.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1170 | 678..781 | 132 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1590 | 677..727 | 113 | 71.2 | Plus |
UFO06578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:44 Download gff for
UFO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 653..1515 | 1..865 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:15 Download gff for
UFO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 654..1516 | 1..865 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:04 Download gff for
UFO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc27-RA | 654..1516 | 1..865 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:04 Download gff for
UFO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7247678..7248434 | 109..865 | 95 | <- | Minus |
| 3L | 7248504..7248579 | 33..108 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:15 Download gff for
UFO06578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7240778..7241534 | 109..865 | 95 | <- | Minus |
| arm_3L | 7241604..7241679 | 33..108 | 94 | <- | Minus |
