UFO06580.5prime Sequence
1120 bp (995 high quality bases) assembled on 2009-08-18
> UFO06580.5prime
CAGTCGACATGGATATACAACAACTGGAGGTGCTGTGCAAGCAACTCTAC
GAAGCCACAGACATCAGAATTCGTTCCGAGGCGGAAAAAGCCCTAGTCAC
ATTCGTAAGCAGCCAGGATGCGCTGCCCAAATGCCAGTTGCTGCTGCAAA
GAGCCGATTCCAGCTACGCCCAGTTGCTGGCCGCTTCCACACTTACCAAA
CTCATTCAGGGATTGAGTCTACAGGAGCGGATCGACATTCGCAGCTATGC
CCTCAACTATCTGGCCACTGTGCCGAATCTGCAGCACTTCGTTGTCCAGG
CATTGGTCAGTCTGCTGGCGAAGCTCACAAAGTACGGATGGTTCGATTCG
TACAAGGAGGAAATGGTCTTCCAAAACCTCTTGGAAGATGTCAAGAAGTT
CTTGCAGGGCTCCGTTGAGCACTGCACCATTGGCGTCCAAATTCTATCAC
AACTGGTGTGTGAGATGAACTCAGTTGTCGAGATGGACGTGCAGGTGTCC
TTTTCCAAAATGCGCAAAATAGCCACATCTTTTCGGGACCAGCAACTCCT
AGAAACCTTTTTGCTATCCTGCTCTCTACTGGTCTCGGCCCGTGATAACA
GCAAAAACATAAGCTTCATGGATGAGTCGCAGCAAGCGTTAATATCACAC
GTCTTACGTTTAACGAAGAATTGTCTGAGCTTCGACTTCATTGGCAGTTC
GACAGATGAATCTGCTGATGATATGAACAACGTTCAGATACCCACAGCTT
GCGTCCTGCATTCTTAGATTCGAACACACTTAAACTCTTTTTTGATTTAT
ATCAAATTTTGCCCAATGGTTTAGCTAGCTACTCCATATCCTGCCTGGTT
CAAATTACATCTGTGCGTCGCTCACTTTTTAATAATTCTGAAAGAACAAA
ATTTCTAACGCACTTGGTCGAAGAGTCAAAGATATTTTAACAACTCTGCA
CGGCTTGAGTGACCAGATACTATCACGAGTTCTGCCGGTTTGCTGGCTCG
CTAGTCTATTATCATTGGGTGAACTTATGCGGTGCATGCTTATCAGAACC
ATTCACTGATAGCTAGTTACTGTTGATCCTGCCCATGGCTTTTGTACCGA
AGTAAGTACTATCACCTTGC
UFO06580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ranbp16-RF | 3755 | CG33180-RF | 73..1184 | 9..1101 | 4975 | 97.8 | Plus |
| Ranbp16-RE | 3950 | CG33180-RE | 73..1184 | 9..1101 | 4975 | 97.8 | Plus |
| Ranbp16-RC | 3683 | CG33180-RC | 73..1184 | 9..1101 | 4975 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15933142..15933539 | 408..11 | 1990 | 100 | Minus |
| X | 23542271 | X | 15932848..15933081 | 639..406 | 1170 | 100 | Minus |
| X | 23542271 | X | 15932245..15932463 | 952..736 | 995 | 99.1 | Minus |
| X | 23542271 | X | 15932522..15932621 | 737..638 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:18 has no hits.
UFO06580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:43 Download gff for
UFO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RB | 52..1104 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:12 Download gff for
UFO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RC | 49..1101 | 9..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:15 Download gff for
UFO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ranbp16-RC | 73..1125 | 9..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:15 Download gff for
UFO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15932850..15933079 | 408..637 | 100 | <- | Minus |
| X | 15932246..15932461 | 738..951 | 99 | <- | Minus |
| X | 15932522..15932621 | 638..737 | 100 | <- | Minus |
| X | 15933143..15933547 | 1..407 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:12 Download gff for
UFO06580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15826279..15826494 | 738..951 | 99 | <- | Minus |
| arm_X | 15826555..15826654 | 638..737 | 100 | <- | Minus |
| arm_X | 15826883..15827112 | 408..637 | 100 | <- | Minus |
| arm_X | 15827176..15827580 | 1..407 | 99 | | Minus |
