UFO06581.5prime Sequence
1080 bp (962 high quality bases) assembled on 2009-08-18
> UFO06581.5prime
CAGTCGACATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGCGGACGCGG
TCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTGACGCCGCC
ACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAAGGCCAGTG
CAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTGATGAGCCC
GAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCGGTCAAGGG
AAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCAGGAGAAGG
CAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAGCTGAGGCA
AAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCGGATGGTGT
GGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGTCGATGAAG
TCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGGTGCCAAAA
GCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAATGGAGCCGC
TACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTATGGATGTGG
ACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATAAAGAAAGG
CATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAACATGCAGCA
GCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGAGCCCACACC
AGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGGACACCGCTC
AAGTAGACACACCAGCCATCGAAAACGTTTCTGCCGCTCCAGAAACAGAA
GCAGCAGCAAGACTACGGAGTCTAGCAATGATGTGGTGCAGTGGCCACAG
AGGGCAAAGAAACAGTTTTAGAAGTGCCCGCTGCCGAGCCCAGAGCCGAA
GCACTGTAGAGTCGCGAGAGCTACGAAACAGCACGTGTGTGACTGAACGA
AGAGGCGGCAGCAGCGAAAAGAGCTAGCAGGTTGTGACTTCTGCGATCAA
GAAGCAAAAGCCATACGGATGAAAGCCCGT
UFO06581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-RC | 2628 | CG1910-RC | 127..1176 | 9..1036 | 4655 | 97.4 | Plus |
| CG1910-RD | 2698 | CG1910-RD | 197..1246 | 9..1036 | 4655 | 97.4 | Plus |
| CG1910-RA | 3015 | CG1910-RA | 514..1563 | 9..1036 | 4655 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31749578..31750271 | 252..942 | 3305 | 99.4 | Plus |
| 3R | 32079331 | 3R | 31749276..31749522 | 9..255 | 1235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 2110..2139 | 740..769 | 114 | 86.7 | Plus |
UFO06581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:47 Download gff for
UFO06581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RD | 171..1153 | 9..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:35 Download gff for
UFO06581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 514..1496 | 9..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:06 Download gff for
UFO06581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RA | 514..1496 | 9..979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:06 Download gff for
UFO06581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31749276..31749521 | 9..254 | 100 | -> | Plus |
| 3R | 31749581..31750317 | 255..979 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:35 Download gff for
UFO06581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27574998..27575243 | 9..254 | 100 | -> | Plus |
| arm_3R | 27575303..27576039 | 255..979 | 98 | | Plus |
