UFO06583.5prime Sequence
1083 bp (972 high quality bases) assembled on 2009-08-18
> UFO06583.5prime
CAGTCGACATGGCTGCACACAAGTCGTTCAGAATAAAGCAGAAGCTGGCT
AAGAAGCTGAAGCAGAACAGATCCGTTCCCCAATGGGTTCGCCTACGTAC
TGGCAACACTATTCGTTACAACGCTAAGCGCCGTCACTGGAGGCGTACCA
AGTTGAAGCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAA
CTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTT
AGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATA
TGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAA
AACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATC
CCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAG
CATTCATCAGCGGGCAAGAATGTGATAAAGGCCGGATAAACTTGTGCTTA
TTTTTCTTTACGTCTTTAAAAGCCGTAATATCCAGCTGACGGTCTGGTAT
AGTACATTGAGCAACTGACTGAAATGCCTCAAATGTTCTTTACGATGCCA
TGGGATATATCACGGGGTTATCAGTGATTTTTTTTCAATTAGCTCTAGCT
CCTGAGATCTAACTCGGTAGCCAAACTACGAGT
UFO06583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL39-RA | 288 | CG3997-RA | 38..194 | 5..161 | 770 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24062198..24062302 | 115..11 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 24061947..24061993 | 161..115 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 730..797 | 123 | 68.1 | Plus |
UFO06583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:47 Download gff for
UFO06583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL39-RA | 32..203 | 1..175 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:26 Download gff for
UFO06583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL39-RA | 34..205 | 1..175 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:46 Download gff for
UFO06583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL39-RA | 34..205 | 1..175 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:46 Download gff for
UFO06583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24061947..24061992 | 116..161 | 100 | <- | Minus |
| 2R | 24062198..24062307 | 1..115 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:26 Download gff for
UFO06583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19949470..19949515 | 116..161 | 100 | <- | Minus |
| arm_2R | 19949721..19949830 | 1..115 | 95 | | Minus |
