UFO06584.5prime Sequence
1136 bp (1000 high quality bases) assembled on 2009-08-18
> UFO06584.5prime
CAGTCGACATGCGAAAGACCCGCTCTCAGACGGCTCGCACGCAGGCGGAA
AATGCCGCAACATCTTCGAGCCCCGGGCACCAGTCGACTTCGTCAGCGCC
AATAGCAGTTAATCCCTTTGATTCCACCAAGTACAAGGAATGTGAGCAAA
TGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGTCGTTTCTG
AACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGCATCCTCTC
GTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCAGGAAGTCT
ACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACATCGACCCA
ACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAGCCCAATCC
CGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGGCGGCCAGA
TGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCATCAACAGC
CAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCCTTCTACGA
TGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACGCAACACTC
AGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGCAGCAGGCC
ACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAGGTGGAGCA
CGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTCGTGCGACC
AGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACAACAAACTC
TGTCAGCTGCCTAATGTCATTCCTACAACCGACCAAATGTGGAGCCCAAG
CGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCTGTCGCCTAC
CGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTACACTCGTAGCT
ACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCACACAGCTTTTGC
AGCGATGAGACGATGGCGTAAAACCAGCGGACTACCCCGCGAGCTTATCA
AGAGAGCCTGACTGAAGATGCTGACTGCGAAATAGCCACCCACTTATGCT
GAAGCTTTCAGTACTGGGCCCGTGGGCAGAATGAAA
UFO06584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-10-RM | 2149 | CG8068-RM | 202..1307 | 9..1109 | 5180 | 98.5 | Plus |
| Su(var)2-10-RN | 2414 | CG8068-RN | 202..1307 | 9..1109 | 5180 | 98.5 | Plus |
| Su(var)2-10-RL | 2150 | CG8068-RL | 202..1307 | 9..1109 | 5180 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9117176..9117852 | 136..812 | 3385 | 100 | Plus |
| 2R | 25286936 | 2R | 9117917..9118144 | 813..1035 | 880 | 96.5 | Plus |
| 2R | 25286936 | 2R | 9116323..9116457 | 9..143 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:22 has no hits.
UFO06584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:46 Download gff for
UFO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RI | 193..1303 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:20 Download gff for
UFO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RI | 197..1307 | 1..1109 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:12 Download gff for
UFO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RL | 197..1307 | 1..1109 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:12 Download gff for
UFO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9116318..9116451 | 1..137 | 97 | -> | Plus |
| 2R | 9117178..9117852 | 138..812 | 100 | -> | Plus |
| 2R | 9117917..9118157 | 813..1047 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:20 Download gff for
UFO06584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5003823..5003956 | 1..137 | 97 | -> | Plus |
| arm_2R | 5004683..5005357 | 138..812 | 100 | -> | Plus |
| arm_2R | 5005422..5005662 | 813..1047 | 95 | -> | Plus |
