UFO06586.5prime Sequence
1113 bp (1018 high quality bases) assembled on 2009-08-18
> UFO06586.5prime
CAGTCGACATGGGGCAAGGAGCTAGACGAATATTGCGGGCGTCCCGCTCG
CAGATTTGCGGTAGTCTTCGAACGGGCGAAGGGTCCAGCACCTCAGCAAG
TTGTCGAAAAGGTACACATAATCATTTTTGTCCTGCAGGCACAAAAATTT
GGAAATTCTTTTATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTG
AAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCC
TTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGAT
GAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACT
ATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGGA
TGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGGCCGGATAAAACTT
GTGCTTATTTTTCTTTACGTCTTTAAAAGGCCGTAATATCCAGCTGACGG
TCTGGTTATAGGTACATTGAGCACTGACTGAATGCCTCAAATGTTCTTTA
CGATGCATGGAAATATCACGTGTATATCAGTGATTTTTTTCTCATTTAGC
TCTAGCTCTGAAGATCCATACTCGATAGCATACTTATCGAGTAGATCATT
TATGAAGCATTAT
UFO06586.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp47-RB | 1285 | CG8928-RB | 1132..1189 | 104..47 | 230 | 93.1 | Minus |
| Rrp47-RB | 1285 | CG8928-RB | 1044..1093 | 152..103 | 205 | 94 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15836295..15836450 | 9..164 | 780 | 100 | Plus |
| X | 23542271 | X | 15946096..15946153 | 104..47 | 230 | 93.1 | Minus |
| X | 23542271 | X | 15946008..15946057 | 152..103 | 205 | 94 | Minus |
Blast to na_te.dros performed 2014-11-28 19:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 733..800 | 123 | 68.1 | Plus |
UFO06586.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:14 Download gff for
UFO06586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32582-RA | 127..288 | 2..168 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:59 Download gff for
UFO06586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32582-RA | 127..288 | 2..168 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 20:22:22 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:22:22 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:35:59 has no hits.
