UFO06588.5prime Sequence
1095 bp (1007 high quality bases) assembled on 2009-08-18
> UFO06588.5prime
CAGTCGACATGGTCAGTTTTGAGGAAGCCGCCGAACTCGCCAAGAACTTC
TCCAAGAAGCCCACCGACTCCGAGTTCCTGGAGTTCTACGGTCTCTTCAA
GCAGGCTACCGTTGGTGATGTGAACATCGACAAGCCCGGCATTCTGGATC
TCAAGAAGAAGGCCATGTACGAGGCCTGGAACGCCCACAAGGGTCTCTCC
AAGGATGCCGCCAAGGAGGCCTACGTGAAGGTGTACGAGAAGTATGCCCC
CAAGTACGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGC
ATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGG
GGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC
TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTA
GGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATAT
GTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAA
ACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCC
CATATCACAGCTCACGTCTTTCATTGCATACGAAATCTGGATGAGCATCA
TCAGCGGGCAAGAATGTGAATAAGCGATAAACTGTGCTTATTTTTCTTTA
CGTCTTAAAGGCGTATATCAGCTGACGTCTGGTTATAGTACATGAGCACT
GACTGAAATGCCTGAAATGTTCTTACGATGCATGGTAATATGCAC
UFO06588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8629-RA | 352 | CG8629-RA | 36..287 | 9..260 | 1260 | 100 | Plus |
| CG8628-RA | 429 | CG8628-RA | 71..310 | 21..260 | 810 | 89.2 | Plus |
| CG8628-RB | 408 | CG8628-RB | 50..289 | 21..260 | 810 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7127978..7128229 | 260..9 | 1260 | 100 | Minus |
| 3L | 28110227 | 3L | 7131147..7131386 | 21..260 | 810 | 89.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 829..896 | 123 | 68.1 | Plus |
UFO06588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:16 Download gff for
UFO06588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8629-RA | 32..287 | 9..265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:41 Download gff for
UFO06588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8629-RA | 36..291 | 9..265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:58 Download gff for
UFO06588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8629-RA | 36..291 | 9..265 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:34:58 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:50:41 has no hits.
