UFO06596.5prime Sequence
1105 bp (-60 high quality bases) assembled on 2009-08-18
> UFO06596.5prime
TAACTTCCCTTTTCATACCTTCCTTATACTAATTTATCCAACATGATAAA
GTTCTTCGCTGCCCTCGGCTGTTTCTCCGCTGTCCTGGCCATCGCATTGG
CATCTACCGCAACTACAACCAGCACTCCCACAACGCCCTCTTCGCCCACG
ACGACGACGTACACCTATACTACCACCCCGACCTACCCCACCTACACCTA
CACCACGGACACCACCACCACTAAGCCAATCAAGCAACAGCTCCTGTCCC
TGCTGTTCAACAAGAAGTCCGGAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGGTATTCACTCC
AGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGG
TGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAA
TTCCGGATGAGCATTCATCAGGCGGGCAAGATGTGAATAAGGCCGGATAA
CTTGTGCTTATTTTTCTTTACGTCTTTAAAGGCGTATATCAGCTGACGTC
TGTATAGTACATGAGCACTGACTGAAATGCTCAAATGTTCTTTACGATGC
AATTG
UFO06596.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13159-RA | 393 | CG13159-RA | 87..311 | 49..273 | 1080 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12375372..12375596 | 49..273 | 1080 | 98.7 | Plus |
Blast to na_te.dros performed 2014-11-28 21:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 841..908 | 123 | 68.1 | Plus |
UFO06596.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:14 Download gff for
UFO06596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13159-RA | 70..314 | 36..279 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:57 Download gff for
UFO06596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13159-RA | 73..317 | 36..279 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:13 Download gff for
UFO06596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13159-RA | 73..317 | 36..279 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 22:26:13 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:36:57 has no hits.
