UFO06603.5prime Sequence
1127 bp (1018 high quality bases) assembled on 2009-08-24
> UFO06603.5prime
CAGTCGACATGGTTTCCGAGCAATTCAACGCCGCCGCCGAGAAGGTGAAG
AGCCTGACCAAGCGTCCCAGTGATGACGAGTTCCTGCAGCTGTACGCCCT
GTTCAAGCAGGCCAGCGTTGGTGACAACGACACCGCCAAGCCGGGTCTCC
TGGACCTGAAGGGCAAGGCCAAGTGGGAGGCCTGGAACAAGCAGAAGGGC
AAGAGCAGCGAGGCCGCCCAGCAGGAGTACATCACCTTTGTGGAGGGCCT
GGTGGCCAAGTATGCCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGA
ATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAAACGTGTAACAAGGTGACACTA
TCCCATATCACAGCTCACGTCTTTCATTGCATACGAAATTCGGATGAGCA
TTCATCAGCGGGCAAGAATGTGAATAAAGGCGGATAAACTTGTGCTTATT
TTTTCTTTACGTCTTTAAAGCGTAATATCAGCTGACCGCTGGTATAGTAC
ATTGAGCACTGACTGATGCTCAATGTTCTTTACCATGCCATTGCATTATC
ACGTGTATACCGATTTTCCATAGCTCC
UFO06603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbi-RA | 420 | CG8627-RA | 64..321 | 9..266 | 1290 | 100 | Plus |
| Dbi-RB | 386 | CG8627-RB | 30..287 | 9..266 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7133117..7133364 | 19..266 | 1240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:21:50 has no hits.
UFO06603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:55 Download gff for
UFO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbi-RA | 52..316 | 1..270 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:06 Download gff for
UFO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbi-RB | 26..290 | 1..270 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:49 Download gff for
UFO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbi-RB | 26..290 | 1..270 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:58:49 Download gff for
UFO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7133114..7133364 | 14..266 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:06 Download gff for
UFO06603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7126214..7126464 | 14..266 | 99 | == | Plus |
