UFO06604.5prime Sequence
1136 bp (993 high quality bases) assembled on 2009-08-24
> UFO06604.5prime
CAGTCGACATGTTGGTTAAGCACATTGTCAAGCAGGGGCTTCTGCTCAAG
AACGCTGGCGCTTTGTCGCGTGCCGCTTACCACGGTGGACATGGTCCCCA
CTCCACCATGAACGATCTGCCCGTGCCCGCTGGAGACTGGAAGGAGCAGC
ACAGCCAGAAGAACGCCAAGTACAATGCCGCGCTCATCACTGGCATTCTC
GTCCTGGCCGGCACTATTGGATTCGTGAAATCTTCTGGTATCATCCACTT
CAACTACTACGCGCCCAAGAGCCTGGACGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGA
ACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTT
GCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTA
AATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATA
TTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGC
CACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATT
CACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGTGTAAC
AAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTTCATTGCCAT
ACGAAATTCCGGATGAGCATTCATCAGCCGGGCAAGAATGGTGAATAAGG
CGGATAAAACTTGTGCTTATTTTTTCTTTACGGCCTTAAAAGCCGTAATA
TCCAGCTGAACCGGTCTTGTTATAGTACATGAGCACTGACTGAATGCCCT
GAACTGTTCTTACGATGCATGGGATATTCCACGGGG
UFO06604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7630-RA | 417 | CG7630-RA | 57..327 | 8..278 | 1355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17425909..17426081 | 54..226 | 865 | 100 | Plus |
| 3L | 28110227 | 3L | 17426139..17426192 | 225..278 | 270 | 100 | Plus |
| 3L | 28110227 | 3L | 17425594..17425640 | 8..54 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:36 has no hits.
UFO06604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:54 Download gff for
UFO06604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7630-RA | 38..321 | 1..284 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:07 Download gff for
UFO06604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7630-RA | 49..332 | 1..284 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:16 Download gff for
UFO06604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7630-RA | 49..332 | 1..284 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:16 Download gff for
UFO06604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17425586..17425640 | 1..54 | 92 | -> | Plus |
| 3L | 17425910..17426079 | 55..224 | 100 | -> | Plus |
| 3L | 17426139..17426192 | 225..278 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:07 Download gff for
UFO06604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17418686..17418740 | 1..54 | 92 | -> | Plus |
| arm_3L | 17419010..17419179 | 55..224 | 100 | -> | Plus |
| arm_3L | 17419239..17419292 | 225..278 | 100 | == | Plus |
