UFO06605.5prime Sequence
1131 bp (999 high quality bases) assembled on 2009-08-24
> UFO06605.5prime
CAGTCGACATGTCTGCCCCAGATAAGGAAAAGGAGAAAGAGAAGGAGGAG
ACCAACAACAAGAGCGAAGACTTGGGTCTCCTGGAGGAGGACGACGAGTT
CGAAGAGTTTCCCGCCGAAGATTTCCGCGTTGGCGACGACGAGGAAGAGC
TAAATGTGTGGGAGGACAACTGGGACGACGACAACGTGGAGGACGACTTC
AGCCAGCAGTTGAAGGCCCATTTGGAGAGCAAGAAAATGGAAACGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCG
GAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCT
CATGGAAAACGGTGTAACAAGGGTGACACTATCCCATATCACCAGCTCCC
CGTCTTTCATTGCCATACGAATTCCGGATGAGCATTCATCAGCGGGCAGA
TGTGAATAAAGCCGGATAAACTTGTGCTTATTTTTTCTTTACGTCTTTAA
AGCCGTATATCCAGCTGAACGGTCTGTTATAGTACATTGAGCACTGACTG
AATGCCTCAATGTTCTTTACGATGCATGGATATATCACGGGATTCATGAA
TTTTTCTCCATTAGCTTCTAGTCTGGAGATC
UFO06605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sem1-RA | 427 | CG13779-RA | 101..337 | 9..245 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7064251..7064377 | 119..245 | 635 | 100 | Plus |
| 2L | 23513712 | 2L | 7064086..7064197 | 9..120 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:28 has no hits.
UFO06605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:53 Download gff for
UFO06605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13779-RA | 94..341 | 1..249 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:28 Download gff for
UFO06605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13779-RA | 93..340 | 1..249 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:44 Download gff for
UFO06605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sem1-RA | 93..340 | 1..249 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:44 Download gff for
UFO06605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7064078..7064197 | 1..120 | 96 | -> | Plus |
| 2L | 7064253..7064377 | 121..245 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:28 Download gff for
UFO06605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7064253..7064377 | 121..245 | 100 | == | Plus |
| arm_2L | 7064078..7064197 | 1..120 | 96 | -> | Plus |
