Clone UFO06606 Report

Search the DGRC for UFO06606

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:66
Well:6
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptNplp2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06606.5prime Sequence

1114 bp (1021 high quality bases) assembled on 2009-08-24

> UFO06606.5prime
CAGTCGACATGGCCAAGCTCGCAATTTGCATCCTCGTGTTCGCCCTGTTC
GCCTTGGCTCTGTCCGCCCGCGTCCCCCGTGAGGAATCCAATCCTGCCCA
AGAATTTCTTACCAAGGCCCAGGGTGATTTCAACGAATTCATTGAAAAGT
TGAAGGCGTTGGACGCGAAGAAGGTTGAGGGTCTCTTCAAGGATGGATTA
AATACCGTGCAGGAGGGTCTGCAAAAACTTAACGAAACATTTCTTCAGGC
ACCAGCCGCATCCACCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGA
ATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACA
CTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGG
ATGAGCATTCATCAGCGGGCAGAATGTGAATAAAGACGATAAACTGTGCT
TATTTTTCTTTACGTCTTAAAAGCGTATATCAACTGAACGTCTGGTTATA
GTACATGAGCACTGACTGAAATGCCTGAATGTTCTTACCATGCATTGGAA
TAATCACGTGGAAT

UFO06606.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
Nplp2-RC 452 CG11051-RC 66..323 9..266 1290 100 Plus
Nplp2-RB 610 CG11051-RB 224..481 9..266 1290 100 Plus
Nplp2-RA 452 CG11051-RA 66..323 9..266 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13356727..13356853 54..180 635 100 Plus
3L 28110227 3L 13357006..13357094 178..266 445 100 Plus
3L 28110227 3L 13356599..13356643 9..53 225 100 Plus
Blast to na_te.dros performed 2014-11-28 20:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
transib1 2167 transib1 TRANSIB1 2167bp 232..299 835..902 123 68.1 Plus

UFO06606.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:53 Download gff for UFO06606.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp2-RA 67..333 9..275 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:48 Download gff for UFO06606.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp2-RA 66..332 9..275 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:26 Download gff for UFO06606.5prime
Subject Subject Range Query Range Percent Splice Strand
Nplp2-RA 66..332 9..275 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:26 Download gff for UFO06606.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13356599..13356643 9..53 100 -> Plus
3L 13356727..13356852 54..179 100 -> Plus
3L 13357008..13357094 180..266 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:48 Download gff for UFO06606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13349699..13349743 9..53 100 -> Plus
arm_3L 13349827..13349952 54..179 100 -> Plus
arm_3L 13350108..13350194 180..266 100 == Plus