UFO06606.5prime Sequence
1114 bp (1021 high quality bases) assembled on 2009-08-24
> UFO06606.5prime
CAGTCGACATGGCCAAGCTCGCAATTTGCATCCTCGTGTTCGCCCTGTTC
GCCTTGGCTCTGTCCGCCCGCGTCCCCCGTGAGGAATCCAATCCTGCCCA
AGAATTTCTTACCAAGGCCCAGGGTGATTTCAACGAATTCATTGAAAAGT
TGAAGGCGTTGGACGCGAAGAAGGTTGAGGGTCTCTTCAAGGATGGATTA
AATACCGTGCAGGAGGGTCTGCAAAAACTTAACGAAACATTTCTTCAGGC
ACCAGCCGCATCCACCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGA
ATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACA
CTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGG
ATGAGCATTCATCAGCGGGCAGAATGTGAATAAAGACGATAAACTGTGCT
TATTTTTCTTTACGTCTTAAAAGCGTATATCAACTGAACGTCTGGTTATA
GTACATGAGCACTGACTGAAATGCCTGAATGTTCTTACCATGCATTGGAA
TAATCACGTGGAAT
UFO06606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nplp2-RC | 452 | CG11051-RC | 66..323 | 9..266 | 1290 | 100 | Plus |
Nplp2-RB | 610 | CG11051-RB | 224..481 | 9..266 | 1290 | 100 | Plus |
Nplp2-RA | 452 | CG11051-RA | 66..323 | 9..266 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13356727..13356853 | 54..180 | 635 | 100 | Plus |
3L | 28110227 | 3L | 13357006..13357094 | 178..266 | 445 | 100 | Plus |
3L | 28110227 | 3L | 13356599..13356643 | 9..53 | 225 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 835..902 | 123 | 68.1 | Plus |
UFO06606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:53 Download gff for
UFO06606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp2-RA | 67..333 | 9..275 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:48 Download gff for
UFO06606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp2-RA | 66..332 | 9..275 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:26 Download gff for
UFO06606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nplp2-RA | 66..332 | 9..275 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:26 Download gff for
UFO06606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13356599..13356643 | 9..53 | 100 | -> | Plus |
3L | 13356727..13356852 | 54..179 | 100 | -> | Plus |
3L | 13357008..13357094 | 180..266 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:48 Download gff for
UFO06606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13349699..13349743 | 9..53 | 100 | -> | Plus |
arm_3L | 13349827..13349952 | 54..179 | 100 | -> | Plus |
arm_3L | 13350108..13350194 | 180..266 | 100 | == | Plus |