UFO06608.5prime Sequence
1092 bp (1001 high quality bases) assembled on 2009-08-24
> UFO06608.5prime
CAGTCGACATGGTTTTGTCCAACGAGGAGCAGGAGTTCATTAAGCGCAAG
CACGAGGCGACGCTGAAGCTGCGCCAGGAGTTCCTCAAGCAGAGCTCCAA
TCCCTACCGCCATGCCACCGGCGAGGGCGGCACCGTTTTCGATGCGGGAT
TAGCCCGTTTCCAGGCGATGCGAGTCTCCAACTACGAACACTTCAAGCCC
ACCGGCAAATCCTTCCGCACGGGCCTTTTCGCCGTCGTCCTGCCGATTGC
CCTCTACGCCTGGGCTTTGAAGGCGGAGCGCGATGGACGCGAGGAGAAGT
ACAGGACTGGCCAGGTGGCCTACAAGGACCGCCAGTTCAAGTTCATCGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCG
AGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTAT
CAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCAC
TCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCC
ATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCA
GGTTTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAACTGCCG
GAAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTC
ATGGAAACGTGTAACAAGGGTGAACACTATCCATATCACAGCTCACGTCT
TTCATGCATACGAAATCGGATGAGCATCATCAGCGGGCCAGATGGAATAA
GCGATAACCTTGTGCTAATTTCTACGGCTGAAGCCGTAATAC
UFO06608.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12859-RA | 477 | CG12859-RA | 70..408 | 9..347 | 1695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14756794..14757003 | 138..347 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 14756585..14756713 | 9..137 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:27 has no hits.
UFO06608.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:52 Download gff for
UFO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12859-RA | 59..408 | 2..353 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:31 Download gff for
UFO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12859-RA | 64..413 | 2..353 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:39 Download gff for
UFO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12859-RA | 64..413 | 2..353 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:39 Download gff for
UFO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14756579..14756713 | 2..137 | 97 | -> | Plus |
| 2R | 14756794..14757003 | 138..347 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:31 Download gff for
UFO06608.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10644084..10644218 | 2..137 | 97 | -> | Plus |
| arm_2R | 10644299..10644508 | 138..347 | 100 | == | Plus |
