UFO06611.5prime Sequence
1093 bp (983 high quality bases) assembled on 2009-08-24
> UFO06611.5prime
CAGTCGACATGCTGAAATATAGCCTTATCTTTGCCCTTTTCGTCGTTTTG
GCCAGCTGCAGTGAGGAGGATCTGCAGGCGCAACTTCTGAAGTCGGAGAA
CCGCCAGAACCTGGATGGAGCTGGGCAGTTCCAGCATGAGATCACGGTCA
GCAATGGGATCCAAGTGAAAGCTCAAGGCAATGTGAACGGCATCCAGGGC
GAATACTTCCTTCCCGGCGAAGATGGCAAGCAAATTCGCGTGACTTACAC
CGCAGATGCAACCGGCTTCCATCCGAAGGTTGAAGAGGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCAT
AATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGT
GCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGT
CCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGT
ACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACG
GCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGG
CCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACG
AAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACC
GTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGT
CGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAA
ACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTT
CATTGCCATACGAAATTCCGGATGAGCATTCATCAGCGGCAAAATGGTGA
ATAAGGCGGATAAACCTTGTGCTATTTTTCTTTACGGTCTTTAAAGGCCG
TAAATCCAGCTGACGCTGGTTTTAGTACATGACACTGACTGAA
UFO06611.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr60D-RB | 581 | CG30163-RB | 19..297 | 9..287 | 1395 | 100 | Plus |
| Cpr60D-RA | 494 | CG30163-RA | 105..383 | 9..287 | 1395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24662966..24663232 | 287..21 | 1335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 856..923 | 123 | 68.1 | Plus |
UFO06611.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:57 Download gff for
UFO06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr60D-RA | 105..383 | 9..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:55 Download gff for
UFO06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr60D-RA | 105..383 | 9..287 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:33 Download gff for
UFO06611.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr60D-RA | 105..383 | 9..287 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:35:33 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:58:55 has no hits.
