UFO06612.5prime Sequence
1081 bp (945 high quality bases) assembled on 2009-08-24
> UFO06612.5prime
CAGTCGACATGGGTTTCGCTACTCTCTGGTACTCGCATCCCCGCAAATAT
GGCCAAGGCTCCCGATGCTGCCGTGCCTGCTCTAACCGCCACGGTCTGAT
CCGCAAGTATGGCCTTAACATCTGCCGCCAGTGCTTCAGGGAGTACGCCA
ACGACATTGGCTTCAAGAAGCTGGACGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAA
TCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATT
CTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCA
CATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCA
CTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACA
AGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATAC
GAAATTCCGGATGAGCATTCATCAGGCGGGGCAAGATGTGATTAAAGGCC
GGATAAAACTTGTGCTTATTTTTTCTTTACGGTCTTTAAAAGGCCGTATA
TCAGCTGAACGGGTCTGGTTATAGGTACATTGAGCACTGACTGAAATGCC
TCAATGTTCTTTACGATGCATGGGATATATCACGGGTGTATATCAGTGAT
TTTTTTCTCAATTAGCTCGTAGCTCTGAGGA
UFO06612.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS29-RB | 1007 | CG8495-RB | 92..261 | 7..176 | 850 | 100 | Plus |
| RpS29-RA | 502 | CG8495-RA | 37..206 | 7..176 | 850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9778618..9778718 | 70..170 | 505 | 100 | Plus |
| 3R | 32079331 | 3R | 9778133..9778196 | 7..70 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 745..812 | 123 | 68.1 | Plus |
UFO06612.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:27:56 Download gff for
UFO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS29-RA | 33..210 | 1..180 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:33 Download gff for
UFO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS29-RA | 32..209 | 1..180 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:52 Download gff for
UFO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS29-RA | 32..209 | 1..180 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:52 Download gff for
UFO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9778128..9778196 | 1..70 | 95 | -> | Plus |
| 3R | 9778619..9778718 | 71..170 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:33 Download gff for
UFO06612.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5604341..5604440 | 71..170 | 100 | == | Plus |
| arm_3R | 5603850..5603918 | 1..70 | 95 | -> | Plus |
