UFO06613.5prime Sequence
1103 bp (974 high quality bases) assembled on 2009-08-24
> UFO06613.5prime
CAGTCGACATGGCCAAGCGCACCAAGAAGGTTGGAATCGTTGGTAAATAT
GGTACCCGTTATGGTGCCTCCCTGCGTAAGATGGTCAAGAAGATGGAAAT
CACCCAGCACAGCAAGTACACTTGCTCCTTCTGCGGCAAGGACTCCATGA
AGCGCGCCGTTGTGGGCATCTGGTCCTGCAAGCGCTGCAAAAGGACCGTC
GCCGGTGGCGCCTGGGTGTACTCCACCACCGCCGCCGCCTCCGTGCGATC
CGCCGTCCGTCGTCTGCGTGAAACCAAGGAACAGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACT
GTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCA
TGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATA
ATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCA
CGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAA
AACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTA
ACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGT
GGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACG
TGTACAAGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATGCC
ATACGAAATTAGATGAGCATTCATCAGCGGCAGATGTGAATAGCGATAAA
CTGTGCTATTTTTCTTACGTCTTTAAAAGCGTATATCAGCTGACGGTCTG
TATAGTACTTGACACTGACTGATGCTCAAATGTCTACATGCATGGCATAT
CAC
UFO06613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL37A-RA | 511 | CG5827-RA | 84..359 | 9..284 | 1380 | 100 | Plus |
| RpL37A-RB | 583 | CG5827-RB | 156..431 | 9..284 | 1380 | 100 | Plus |
| RpL37A-RC | 705 | CG5827-RC | 127..402 | 9..284 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5071607..5071752 | 139..284 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 5071226..5071356 | 11..141 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:05:44 has no hits.
UFO06613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:34 Download gff for
UFO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL37A-RB | 111..396 | 1..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:28 Download gff for
UFO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL37A-RC | 120..405 | 1..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:33 Download gff for
UFO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL37A-RC | 120..405 | 1..288 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:33 Download gff for
UFO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5071218..5071355 | 1..140 | 97 | -> | Plus |
| 2L | 5071609..5071752 | 141..284 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:28 Download gff for
UFO06613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5071218..5071355 | 1..140 | 97 | -> | Plus |
| arm_2L | 5071609..5071752 | 141..284 | 100 | == | Plus |
