UFO06620.5prime Sequence
1166 bp (1050 high quality bases) assembled on 2009-08-24
> UFO06620.5prime
CAGTCGACATGAATCAATGGAGTTGCCATATCAACGGTCCGGTGACTAAG
CTCAACCTCTCAACCTCGACCTCAGCCTCAGTCCTTCTACCTACTACCTA
CTACCTACTACCTCTCACTATCCCCAGTAGTACGACATCCTGGCCCCCAA
AAACCACGGACATTACGACGCACACATCCTGCGACAGACACACGGCGCCC
CAACATTTCCCACATTTTCAAGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCT
TGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCA
GAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGT
GAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAAAT
TCCGGATGAGCATTCATCAGCGGGCAGGATGTGAATAAAGGCCGGATAAA
ACTTGTGCTTATTTTTTCTTTACGGTCTTTAAAAAGGCCGTATATCCAGC
TGACGGTCTGGTTATAGGTACATTGAGCACTGACTGAAATGCCTCAATGT
TCTTTACGAATGCCATGGATATATCACGGGGTATATCCAATGACTTTTCT
CATTAGCTCCTAGCTCCTGAAGAATCCTACTTCGTAGCTACTTACCGAAG
TTAGATTCAATTATTG
UFO06620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33181-RF | 4113 | CG32714-RF | 274..486 | 9..221 | 1065 | 100 | Plus |
| CG33181-RI | 3920 | CG33181-RI | 176..371 | 26..221 | 980 | 100 | Plus |
| CG33181-RH | 4107 | CG33181-RH | 285..480 | 26..221 | 980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8509455..8509651 | 25..221 | 985 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 790..857 | 123 | 68.1 | Plus |
UFO06620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:30 Download gff for
UFO06620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33181-RF | 268..488 | 1..225 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 01:12:23 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 23:35:27 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:27 Download gff for
UFO06620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8509456..8509651 | 26..221 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:23 Download gff for
UFO06620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8403489..8403684 | 26..221 | 100 | == | Plus |
