UFO06625.5prime Sequence
1063 bp (912 high quality bases) assembled on 2009-08-24
> UFO06625.5prime
CAGTCGACATGAGTTCCAATTCTCTATTCGAAACCGACGAAGATGTCGCT
CAGGCAAACAAGTTATCCCGAAAAGTGAAGGAGTCCCCCTTTATGCTGGT
GGGTATTGCCGGATTCGTGGCCGCAGGTTTGATTGGAGCCTACAAATATC
GGAACCGAGGCAGCATGAGCACCAGCGTCTTTCTGATGCATTTGCGTGTG
GCTGCCCAGGGAACCGTCGTTGGATGTTTGACAGCCGGATTGGCGTACAC
CATGGCCAAGGAGTACCTGCTCCACGAGGAACCGAAAAGCAATACCAGGC
CAGACGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTC
ACCCAGGGATTGGCTGAGACGAAAACATATTCTCAATAAACCCTTTAGGG
AAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTG
TAGAAACTGCCGGAATCGTCGTGTATTCACTCCAGAGCGATGAAACGTTT
CAGTTTGCTCATGCAAACGAGTACATGGTGACACTATCCATATCAGCAGC
TCACGTCTTTCATGCATACGAAATGCGATGAGCATCATCAGCGGCAGAAT
GTGAATAACGCGATCAAGCTGTGCTTATCTTTCTTACGTCTGGAAAGGCG
TATATCAGCTGAA
UFO06625.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 1218 | CG11825-RC | 687..986 | 9..308 | 1485 | 99.7 | Plus |
| CG11825-RA | 598 | CG11825-RA | 67..366 | 9..308 | 1485 | 99.7 | Plus |
| CG11825-RD | 1068 | CG11825-RD | 569..836 | 41..308 | 1325 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10420704..10421003 | 308..9 | 1485 | 99.7 | Minus |
| 3R | 32079331 | 3R | 11242837..11243014 | 279..102 | 485 | 84.8 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 104..9 | 210 | 81.2 | Minus |
Blast to na_te.dros performed 2014-11-28 23:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 1151..1181 | 977..1008 | 112 | 87.5 | Plus |
UFO06625.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:28 Download gff for
UFO06625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 56..367 | 1..312 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:03 Download gff for
UFO06625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 58..369 | 1..312 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:10 Download gff for
UFO06625.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 58..369 | 1..312 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:57:10 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:56:03 has no hits.
