UFO06629.5prime Sequence
1101 bp (998 high quality bases) assembled on 2009-08-24
> UFO06629.5prime
CAGTCGACATGGTTCACCAAACTCGCACACCCAGCAAGGCCATTCCCGCC
AAGCACCTGAGTCCCATGCGGACCGTGGAGGGTCTGGGCGGAAAGTACGC
CGTTTCGAGCAGTCCGGCGGATAGTTTCCTGCGGAACACCAGGCTCACGG
CTCAGAGCAGCTCCCAGCAGTCGGCCGCCTTCAAATACAATCAGATGGTC
ACCCACAATCGGGAGCAGTTCAATAACCTGCACTTCTGCGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATC
GTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAA
AACGGTGTAACAAGGGTGACACTATCCCATATCACCAGCTCACCGTCTTT
CATTGCCATACGAATTCCGGATGAGCATTCATCAGCGGGCAGATGTGATA
AGCGATAACTTGTGCTTATTTTTCTTTACGTCTTTAAAGCGTATATCCAG
CTGACGGTCTGGTTATAGTACATGGAGCACTGACTGAATGCCTCAATGTC
TTACATGCATGGATTATCACGGGAATCATGATTTTCCATAGCTCTTAGCC
T
UFO06629.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42305-RC | 1018 | CG42305-RC | 660..890 | 9..239 | 1155 | 100 | Plus |
| CG42305-RB | 779 | CG42305-RB | 299..529 | 9..239 | 1155 | 100 | Plus |
| CG42305-RA | 657 | CG42305-RA | 299..529 | 9..239 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18813461..18813691 | 9..239 | 1155 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:33 has no hits.
UFO06629.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:27 Download gff for
UFO06629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17325-RA | 290..528 | 1..239 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:04 Download gff for
UFO06629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42305-RB | 291..529 | 1..239 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:26 Download gff for
UFO06629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42305-RA | 291..529 | 1..239 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:26 Download gff for
UFO06629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18813453..18813691 | 1..239 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:04 Download gff for
UFO06629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18813453..18813691 | 1..239 | 98 | == | Plus |
