UFO06633.5prime Sequence
1106 bp (991 high quality bases) assembled on 2009-08-24
> UFO06633.5prime
CAGTCGACATGTGCAACGCTCTCTGTGAATGCCTCAAATGTCCCGGCAAA
GTGGTTTGCTGCTGCTGTTCCTGCGCCTGCAAGATGCTCCTGAGCATCGT
GTTTTCTGCGCTCCTGATGGTCGTGGTGATCGGCTTGATTGTCTACTTCA
CGGTCTTCTATCACAAGGATAAGAACACGGATGAGGTGCAGAAGCAGGTC
GCCCAACTGACGCCCATTGTGAAGCGCAGCATACGCGACTACTTCAACAA
GGAGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCC
GCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGA
CATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATC
AGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGC
GAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCA
CCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGG
AAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTG
TAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACG
TTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCAT
ATCACCAGCTCACGTCTTTCATTGCCATACGAAATTCCGGATGAGCATTC
ATCAGCGGGCAAGAATGTGAATAAAGCCGATAAAACTGTGCTTATTTTTC
TTTACGTCTTTAAAAGCGTAATATCAGCTGAACGCTGTTATAGTACATGA
GCACTGACTGAATGCCTCAATGTTCTTACGATGCATGCATATCACGTGAT
ATCCGG
UFO06633.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mex1-RC | 1034 | CG7936-RC | 425..674 | 8..257 | 1250 | 100 | Plus |
| mex1-RA | 710 | CG7936-RA | 101..350 | 8..257 | 1250 | 100 | Plus |
| mex1-RB | 741 | CG7936-RB | 83..332 | 8..257 | 1145 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15517833..15518034 | 257..56 | 995 | 99.5 | Minus |
| 3L | 28110227 | 3L | 15518308..15518361 | 61..8 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 826..893 | 123 | 68.1 | Plus |
UFO06633.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:26 Download gff for
UFO06633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mex1-RA | 90..351 | 1..264 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:48 Download gff for
UFO06633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mex1-RA | 95..356 | 1..264 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:13 Download gff for
UFO06633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mex1-RA | 95..356 | 1..264 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:13 Download gff for
UFO06633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15517833..15518028 | 62..257 | 100 | <- | Minus |
| 3L | 15518308..15518367 | 1..61 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:48 Download gff for
UFO06633.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15510933..15511128 | 62..257 | 100 | <- | Minus |
| arm_3L | 15511408..15511467 | 1..61 | 95 | | Minus |
