UFO06638.5prime Sequence
1069 bp (963 high quality bases) assembled on 2009-08-24
> UFO06638.5prime
CAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCTTCAAGATG
ACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGCACCAAGCA
CTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCACAAATGGC
GCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCAAGGGACAG
TATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACCCGCCACAT
GCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCGCGAGCTGG
AGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCGCCCACGGC
GTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAGCAGCTGTC
GGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGAGAACGAGG
CAAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAATCAAACTGGTGAAACTCACCCAGGGAT
GGCTGAGACGAAAACATATCTCATAACCCTTTAGAATAGCAGTTTCACGT
ACACGCCACATCTGCGAATATATGTGTAGAACTGCGAAATCGTCTGTATC
ACTCGAGCGATGAAACGTTTCAGTGCTCATGAACGGTACCAGTGAACCTA
TCATTTACAGCTACGGTCT
UFO06638.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL32-RC | 747 | CG7939-RC | 220..660 | 9..449 | 2205 | 100 | Plus |
| RpL32-RD | 747 | CG7939-RD | 275..688 | 36..449 | 2055 | 99.8 | Plus |
| RpL32-RB | 524 | CG7939-RB | 28..437 | 40..449 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30045316..30045625 | 449..140 | 1550 | 100 | Minus |
| 3R | 32079331 | 3R | 30045687..30045787 | 140..40 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:32 has no hits.
UFO06638.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:24 Download gff for
UFO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 214..667 | 1..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:38 Download gff for
UFO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 214..667 | 1..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:05 Download gff for
UFO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL32-RC | 214..667 | 1..458 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:05 Download gff for
UFO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30045316..30045624 | 141..449 | 100 | <- | Minus |
| 3R | 30045687..30045786 | 41..140 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:38 Download gff for
UFO06638.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25871038..25871346 | 141..449 | 100 | <- | Minus |
| arm_3R | 25871409..25871508 | 41..140 | 100 | <- | Minus |
