UFO06639.5prime Sequence
1094 bp (993 high quality bases) assembled on 2009-08-24
> UFO06639.5prime
CAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATGAGGGCGTC
AATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTCCTCGAGAC
GGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAAGGACAAGC
GTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCAAGATGAAG
GTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAGGCCAACAA
CGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAAGAACAAGA
AGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGGCCTCTGAG
TCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTGAACAAGGC
CGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGATTGGCAAGA
TCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGGTGCTCTGC
CTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAGCTGGCCCA
AAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAAGAAGAACT
GGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGACCGCCCCAG
CGTCTTTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CGCCCTGCACTCATCGCAGTACTGTGTAATTCATTAAGCATCTGCGACAT
GCAGCATCACAAACGGCATGATGACTGAATCGCAGCGCATCAGCACTGTC
GCTGCGTTAAATTGCCATGTGAACGGGGCGAAGAAGTGGTCATATGCCAC
GTTAATCAACTGGTGACTCACCAGATGGCTGAAACGAAAACATT
UFO06639.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL10Ab-RA | 750 | CG7283-RA | 36..686 | 9..659 | 3255 | 100 | Plus |
| RpL10Ab-RF | 960 | CG7283-RF | 407..896 | 170..659 | 2450 | 100 | Plus |
| RpL10Ab-RF | 960 | CG7283-RF | 36..198 | 9..171 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11823658..11824147 | 170..659 | 2450 | 100 | Plus |
| 3L | 28110227 | 3L | 11823200..11823357 | 14..171 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:21 has no hits.
UFO06639.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:23 Download gff for
UFO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL10Ab-RA | 27..685 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:38 Download gff for
UFO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL10Ab-RA | 28..686 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:22 Download gff for
UFO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL10Ab-RA | 28..686 | 1..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:22 Download gff for
UFO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11823197..11823355 | 8..169 | 98 | -> | Plus |
| 3L | 11823658..11824147 | 170..659 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:38 Download gff for
UFO06639.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11816297..11816455 | 8..169 | 98 | -> | Plus |
| arm_3L | 11816758..11817247 | 170..659 | 100 | == | Plus |
