UFO06643.5prime Sequence
1123 bp (983 high quality bases) assembled on 2009-08-24
> UFO06643.5prime
CAGTCGACATGGCTCCACCACAGAGAATGCGCGTCGCTAACGAGAAGGCC
AGCAAATATGTGACAATGCGTGGCAATGTACCCAAATCCTCGAAAACGAA
AGAGGGTCAATATCCGGTGGGTCCCTGGCTCCTGGCGCTGTTCATCTTTG
TGGTCTGCGGCTCTGCCATTTTCCAGATTGTTCAGTCGATACGCGCCGCG
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCA
TAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCT
GGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATC
TATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGC
CACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAA
GCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCT
TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG
TTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGG
ATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGG
CCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAAC
TGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGT
TTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCA
GCTCACCGTCTTTCATTGCCATACGAATTCCGGATGAGCATTCATCAGCG
GGCAGATGTGAATAAAGGCCGGATAACTTGTGCTTATTTTTCTTTACGGT
CTTTAAAAGCCGTAATATCCAGCTGACGGTCTGGTATAGTACATGAGCAC
TGACTGAAATGCCTCAAATGTTCTTACGATGCATGGATATATCAACGGGG
GATATCCAGTGATTTTCTCATTAGCCTTCTAACGTCTGAAAGATCCTAAC
TCGAAGCATACCTTAACAGTTAG
UFO06643.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32276-RB | 739 | CG32276-RB | 87..278 | 9..200 | 960 | 100 | Plus |
| CG32276-RA | 865 | CG32276-RA | 213..404 | 9..200 | 960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3198324..3198432 | 200..92 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 3198752..3198835 | 92..9 | 420 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 769..836 | 123 | 68.1 | Plus |
UFO06643.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:22 Download gff for
UFO06643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32276-RA | 204..404 | 2..205 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:35 Download gff for
UFO06643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32276-RA | 208..408 | 2..205 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:20 Download gff for
UFO06643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32276-RA | 208..408 | 2..205 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:20 Download gff for
UFO06643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3198324..3198431 | 93..200 | 100 | <- | Minus |
| 3L | 3198752..3198840 | 2..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:35 Download gff for
UFO06643.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3198324..3198431 | 93..200 | 100 | <- | Minus |
| arm_3L | 3198752..3198840 | 2..92 | 95 | | Minus |
