UFO06644.5prime Sequence
1104 bp (1009 high quality bases) assembled on 2009-08-24
> UFO06644.5prime
CAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCCAGTTGTCG
AAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGGGATGACTA
CTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGATCCCGTCA
CCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAGTGGCCATT
GGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTTCCGTGGTC
AAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGACAAGAAGA
TGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCAACGGCATG
AGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGCAACGAATG
TGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATATTTGTCCG
ACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGATGCTGGAT
GCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAAACGATCAC
CATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATCCCTGGGAC
TAAACGAACTCCATTTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
AGCGGCATCAGCACTGTCGGCTTGCGTATAATATTTTGCCCATGGTGAAC
GGGGGCGAGAGTTGTCCTTATTGGCCACGTTTATCAACTGGTGACTCACC
AGGATGCTGAAACGAAACATTCCATACGTAGAAAGGCAGGTCCCGTACGC
AATT
UFO06644.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6951-RA | 910 | CG6951-RA | 125..733 | 9..617 | 3045 | 100 | Plus |
| CG6951-RB | 1062 | CG6951-RB | 277..885 | 9..617 | 3045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20244167..20244579 | 9..421 | 2065 | 100 | Plus |
| 3L | 28110227 | 3L | 20244935..20245135 | 417..617 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:43 has no hits.
UFO06644.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:21 Download gff for
UFO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6951-RA | 82..700 | 1..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:12 Download gff for
UFO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6951-RB | 270..888 | 1..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:19 Download gff for
UFO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6951-RB | 270..888 | 1..621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:19 Download gff for
UFO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20244162..20244577 | 1..419 | 99 | -> | Plus |
| 3L | 20244938..20245138 | 420..621 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:12 Download gff for
UFO06644.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20237262..20237677 | 1..419 | 99 | -> | Plus |
| arm_3L | 20238038..20238238 | 420..621 | 99 | == | Plus |
