UFO06649.5prime Sequence
1065 bp (960 high quality bases) assembled on 2009-08-24
> UFO06649.5prime
CAGTCGACATGGACTTCAATTACCATGTGGATTCGGCACTTACCACTTTA
TTGGAAAACCAAAAGTTCTTCAAAGAAATGGCAGAAGTCGTGTCCGATTT
CAGTGATGGCAGGGAGATCCAGAAGTTGTTGGACCAGAACGTGGATCTCG
CCGAGAATCTCATCCGAATGAAGAGCAAGCACCAATTGCTCAGCAAGGCT
ATGAAGCATGCCAAAAACTCTAGCAACACCATCGAGAAGTTCGAGGAAGT
CTGGAAGGAGCGCTCCGAAGCGGTGGAGCAGAAGCGCATCGATGTCAAGA
ACTCAGCCGAGTTCAAAAACTTCATGAAAGCGGCAGCTCCCCAGGCGGGT
GCGGAAACAAATGGTCAAGCGAATAGCGCCGCCCATGACGAGGACCTTAT
CATGGAAGCCACCGGCGGCGAGGTCTTCTCGCTCTACGATCCCTGGTCCA
AAGCCTTGATAAAGAACCCCGTGCGCAACAAAAAGTGCGGCCACATCTAC
GACCGCGACTCGGTGATGCTGATCATCACGGACAACATTGGTATTCGATG
CCCAGTGCTCGGCTGTCCCAACAGGTCCTACATCCATCCAGCGCACCTGG
TCAAGGACTCCAACCTACAGCAGAAGTTGCAAGAGCGCATGTCTGACGCG
ATCGAGAAAGAAACTTCCTCGGAGGAGGACGATGAACAGGCAGATCATGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGATCTATC
ACAGAGTCCAAGCGAGCTCGATATCAATACGCCGCCTGCCACTCATCGCA
GTACTGTTGTATCATAGCAATCTGCGACATGCAGCATCCAACCGGCATGA
TGACTGATCGCAGCGCATCAGCACTGGTCGCTGCGTATAAATATTTGCCA
TGCTGAACGGGGGCA
UFO06649.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 1141 | CG15645-RD | 283..972 | 9..698 | 3450 | 100 | Plus |
| cerv-RA | 968 | CG15645-RA | 110..799 | 9..698 | 3450 | 100 | Plus |
| cerv-RC | 952 | CG15645-RC | 110..783 | 9..698 | 3200 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15577155..15577767 | 698..86 | 3065 | 100 | Minus |
| 3L | 28110227 | 3L | 17479362..17480060 | 9..686 | 1550 | 82.1 | Plus |
| X | 23542271 | X | 15575042..15575511 | 698..211 | 935 | 79.9 | Minus |
| X | 23542271 | X | 15555348..15555675 | 698..371 | 785 | 82.6 | Minus |
| X | 23542271 | X | 15577811..15577889 | 87..9 | 395 | 100 | Minus |
| X | 23542271 | X | 15555720..15555814 | 305..211 | 385 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:22 has no hits.
UFO06649.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:17 Download gff for
UFO06649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 96..790 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:32 Download gff for
UFO06649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..804 | 9..706 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:58 Download gff for
UFO06649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..804 | 9..706 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:58 Download gff for
UFO06649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15577811..15577889 | 9..87 | 100 | | Minus |
| X | 15577150..15577765 | 88..706 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:32 Download gff for
UFO06649.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15471183..15471798 | 88..706 | 99 | <- | Minus |
| arm_X | 15471844..15471922 | 9..87 | 100 | | Minus |
