UFO06650.5prime Sequence
1092 bp (972 high quality bases) assembled on 2009-08-24
> UFO06650.5prime
CAGTCGACATGCAGGTGCTAGGCGGCAATCCACTCAGCTTGTGTCTCTTG
GTGATCATCACTCCGTCACTGATTGCAGCCAATCCCCTGTGGAGTCTTGA
CCAGGTGGGAGCATACTTCACTGGCATCTTCCGCTCCGTAGTGGGTCCAA
TATTTGGCTTTGGCCTGGCAGCCAACAGCACCGCCTTAGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCG
TATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTG
GCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGAC
GAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCAC
CGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCG
TCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAA
AACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTT
TCATTGCCATACGAAATTCCAGATGAGCATTCATCAGCGGGCAGATGTGA
ATAAAGGCGGATAAAACTGTGCTTATTTTTCTTTACGGTCTTTAAAAGCC
GTATATCCAGCTGAACGGTCTGGTTATAGTACATGAGCACTGACTGAATG
CCTCAAATGTCTTACGATGCATGGATATATCACGGGGTTATCCATGATTT
TTCCCATTAGCTCTAGCTCCTGAAGATCCTACTCGTAAGCAT
UFO06650.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30033-RC | 572 | CG30033-RC | 18..197 | 9..188 | 900 | 100 | Plus |
| CG30033-RB | 1002 | CG30033-RB | 18..197 | 9..188 | 900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11292548..11292650 | 9..111 | 515 | 100 | Plus |
| 2R | 25286936 | 2R | 11292708..11292786 | 110..188 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 757..824 | 123 | 68.1 | Plus |
UFO06650.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:17 Download gff for
UFO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30033-RB | 21..208 | 9..196 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:20 Download gff for
UFO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30033-RB | 18..205 | 9..196 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:50 Download gff for
UFO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30033-RB | 18..205 | 9..196 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:50 Download gff for
UFO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11292548..11292650 | 9..111 | 100 | -> | Plus |
| 2R | 11292710..11292786 | 112..188 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:20 Download gff for
UFO06650.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7180053..7180155 | 9..111 | 100 | -> | Plus |
| arm_2R | 7180215..7180291 | 112..188 | 100 | == | Plus |
