UFO06652.5prime Sequence
1106 bp (1007 high quality bases) assembled on 2009-08-24
> UFO06652.5prime
CAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATCCTAACCCA
ATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTGATAGCATA
TCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAACCGGAAAC
CATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTCAGGTGCTA
TACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTCATCGTGGG
CATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCATGAACGCA
AACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACAAGGTCCTC
GATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTATAAGCAGAT
CACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGGAAGTTATG
CCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCGTTGGACTG
CTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTTCTGTCTTC
AGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTATATAACAT
TGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCATCTATGTG
CGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTCTATCTAAA
TATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATTCTATATCG
ACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAAGCAATCGGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAATCATAATCATAATCACACTAGCCTAGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACATAAAAACGCCCGGCGCACCGAGCGTTCT
GAACAATCAGATGGAGTTCTGAGTCATACTGATCTATCACAGGAGTCAGC
GAGCTCGATATCATACGCCCCGCCTGCCACTCATCGCAGTACTGTGTATC
ATAGCATTCTGCGACTGAAGCATCAAACGCATGATGACTGAATCGCCACG
ATCGAC
UFO06652.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18609-RA | 989 | CG18609-RA | 52..840 | 9..796 | 3920 | 99.9 | Plus |
| CG17821-RA | 1073 | CG17821-RA | 616..711 | 339..434 | 180 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18742674..18743239 | 789..224 | 2830 | 100 | Minus |
| 2R | 25286936 | 2R | 18743299..18743486 | 226..39 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:07 has no hits.
UFO06652.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:14 Download gff for
UFO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18609-RA | 42..833 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:20 Download gff for
UFO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18609-RA | 52..847 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:17 Download gff for
UFO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18609-RA | 52..847 | 9..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:17 Download gff for
UFO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18742659..18743238 | 225..805 | 99 | <- | Minus |
| 2R | 18743301..18743485 | 40..224 | 100 | <- | Minus |
| 2R | 18743545..18743575 | 9..39 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:20 Download gff for
UFO06652.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14630164..14630743 | 225..805 | 99 | <- | Minus |
| arm_2R | 14630806..14630990 | 40..224 | 100 | <- | Minus |
| arm_2R | 14631050..14631080 | 9..39 | 100 | | Minus |
