UFO06655.5prime Sequence
1094 bp (996 high quality bases) assembled on 2009-08-24
> UFO06655.5prime
CAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGAGCGATTTG
CAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGACGATGACAA
CCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCCGTACAACA
AGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATCCTTTCAAG
CCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAACATCGATGA
GAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTGGAAACCGG
CCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAATCAACGAC
CCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAGTTTCTTAA
GGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAAGAAGCACA
GCGAAAAACGTCCGGCCGACGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAAAC
TGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCATAA
ACCCTTTAGAGATAGCCAGTTTCACCGTACACGCCACATCTTGCGAATAT
ATGTGGTAGAACTGGCGGAAATCGTCTGTAGTCACTCGACGATGAAAACG
TTTCAGTTGCTCATGGAACGGGTAACAGGGTAACATATCATTAC
UFO06655.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc10-RA | 999 | CG5788-RA | 309..770 | 9..470 | 2310 | 100 | Plus |
| Ubc84D-RA | 637 | CG12799-RA | 191..536 | 101..446 | 440 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17788641..17789102 | 470..9 | 2310 | 100 | Minus |
| 3R | 32079331 | 3R | 7518921..7519266 | 446..101 | 440 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:03:45 has no hits.
UFO06655.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:13 Download gff for
UFO06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD10-RA | 301..773 | 1..476 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:35 Download gff for
UFO06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UbcD10-RA | 302..774 | 1..476 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:40 Download gff for
UFO06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc10-RA | 302..774 | 1..476 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:40 Download gff for
UFO06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17788641..17789109 | 1..470 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:35 Download gff for
UFO06655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13676146..13676614 | 1..470 | 99 | | Minus |
