UFO06656.5prime Sequence
1144 bp (1020 high quality bases) assembled on 2009-08-24
> UFO06656.5prime
CAGTCGACATGAACCGAAATTACATTGTCATACTGCAGCTGCTGGGAGTG
TTGGTTGTGCTGACCTACGCCAGTGCAATCCCCAAATACGAAGATAGCCA
TAAGTTCTATGCGGATAAGGCGCAGCGGGATAGGTCGTACTTTAATGAAA
ACAAGACCCAGCCTAGTGAACCGCAGACAGCTTCCACGAAGGATAGACTG
GAACGACTGGGCTATACCACTGGCTACGGATCCCTAAATGGTTATCCTGG
CGGTACTGGACTATCCGCCTACAATCCCATAAAACTGGACCTGGGTGGCG
TTGTCTTAGGAACTCTTGTGGGCATAGGTGCCATTATACTGATTCCTAAG
ATTCTATCCGCCTTCCATGGTGGTTATGGAGGCTACGGCCGCAGCGAGGA
CAGTGACCTAACACCACTGAGCAGCATGATCAATAAGATTGACGATGTTC
TGGGCCAGAATAATATTGACTCGACGAGTTGCATGCAACGTGCTGTGTGC
GGTTATGTTCGCTCTACGGAGTATAATATGAAGATCGGTTCCTCAGACCA
GATGGACGAATTTATTCATATGCTAGCGGAAAATGCCCTGGTGGATTACC
TCCTCGATGGAACGGCTATTAAGGAGGCATTGGAGCATGGAAAGCGAGCC
AATGATCGAGCCTGTGAAGAGGTGTACTCCAATTGTCCGCTGGACAGTAA
ATCAGCTACGGATATTCTAATGAAGCTGATGCCAAAGAAAAACCCACAAG
GAAAAGGAAAATCATCTGGAATTTCCCGAGAAAAGAAGTTGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACACTAGCCTAGAGATCCTGGTCATGACTAG
TGCTTGGATCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGA
ACAAATTCAGATGGAGTCTGAGGTCATTACTGGATCTATCACAGGAGTCC
AGCGAGCTCGATATCAATTACGCGCTGCAGTCATCGCAGTACTGTTGTAT
TCATAGCATCTGCGACTGAGCCATCCAACGCATGATGACTGAATCGCACG
GCATCAGACCTGTCCCTGGCTAATTGCATGGTGAACGGAGCCGA
UFO06656.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Desi-RA | 1005 | CG14686-RA | 124..903 | 9..788 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10780516..10780723 | 581..788 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 10780261..10780447 | 394..580 | 935 | 100 | Plus |
| 3R | 32079331 | 3R | 10780049..10780207 | 240..398 | 780 | 99.4 | Plus |
| 3R | 32079331 | 3R | 10779838..10779974 | 104..240 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 10779692..10779788 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:12 has no hits.
UFO06656.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:12 Download gff for
UFO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14686-RA | 111..897 | 1..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:32 Download gff for
UFO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Desi-RA | 117..903 | 1..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:17 Download gff for
UFO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Desi-RA | 117..903 | 1..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:17 Download gff for
UFO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10779685..10779786 | 1..103 | 96 | -> | Plus |
| 3R | 10779838..10779973 | 104..239 | 100 | -> | Plus |
| 3R | 10780049..10780202 | 240..393 | 100 | -> | Plus |
| 3R | 10780261..10780447 | 394..580 | 100 | -> | Plus |
| 3R | 10780516..10780723 | 581..788 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:32 Download gff for
UFO06656.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6605560..6605695 | 104..239 | 100 | -> | Plus |
| arm_3R | 6605771..6605924 | 240..393 | 100 | -> | Plus |
| arm_3R | 6605983..6606169 | 394..580 | 100 | -> | Plus |
| arm_3R | 6605407..6605508 | 1..103 | 96 | -> | Plus |
| arm_3R | 6606238..6606445 | 581..788 | 100 | == | Plus |
