UFO06657.5prime Sequence
1041 bp (946 high quality bases) assembled on 2009-08-24
> UFO06657.5prime
CAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGGGGGGAGTT
GGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTTATTGAAAA
GTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGAGGTGGACA
GCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAGAGCAATTC
GCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTTATTGTAAT
GTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAGTATGAAAA
ATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCCTACTAGTC
GCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACCGCTGAAGG
TAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGCATCTGCAA
AGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTCGAGAGATG
AATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGTTGTACGCT
TTTAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGACCTGATCGCAGCGGCATCAGCACC
TGTCGCTGCGTATATATTTGCCCATGGTGAAACGGGGCGAGAGTGTCATA
TTGCCACGTTTAATCAACTGTGACTCACCAGATGCTGAAACGAAAACATA
TCCATACGTAAGAATAGCAGGTTCCGTAACGCCACTGCATA
UFO06657.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rap2l-RA | 1002 | CG3204-RA | 389..934 | 9..554 | 2730 | 100 | Plus |
| Rap2l-RD | 660 | CG3204-RD | 182..592 | 144..554 | 2055 | 100 | Plus |
| Rap2l-RC | 574 | CG3204-RC | 96..506 | 144..554 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24065181..24065337 | 398..554 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 24064732..24064872 | 142..282 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 24063439..24063575 | 9..145 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 24064990..24065113 | 279..402 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:03:33 has no hits.
UFO06657.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:11 Download gff for
UFO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rap2l-RA | 387..932 | 9..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:05 Download gff for
UFO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rap2l-RA | 389..934 | 9..554 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:13 Download gff for
UFO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rap2l-RA | 389..934 | 9..554 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:13 Download gff for
UFO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24063439..24063573 | 9..143 | 100 | -> | Plus |
| 2R | 24064734..24064871 | 144..281 | 100 | -> | Plus |
| 2R | 24064993..24065110 | 282..399 | 100 | -> | Plus |
| 2R | 24065183..24065337 | 400..554 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:05 Download gff for
UFO06657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19950962..19951096 | 9..143 | 100 | -> | Plus |
| arm_2R | 19952257..19952394 | 144..281 | 100 | -> | Plus |
| arm_2R | 19952516..19952633 | 282..399 | 100 | -> | Plus |
| arm_2R | 19952706..19952860 | 400..554 | 100 | == | Plus |
