UFO06659.5prime Sequence
522 bp (442 high quality bases) assembled on 2009-08-24
> UFO06659.5prime
CAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACGAAGTTCTG
GAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAATGCGGCTTT
GATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGACGAGTTCA
TCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAGGACACCAG
CCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGATCAGCGCAT
TTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAGCCAGATCG
AATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGCGCGAAGTA
GATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTCACCGAGGA
GTGGCTGAAAGCCAAGCTCAAGGCAAGCTTTCTAGACCATTCGGTTGGGC
GGCGGGGGCCCAAGGTAAGTGGTCATATCATATTCATATTCATAATCATA
ATCCCCACTAGCCTAGGAAATC
UFO06659.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5869-RA | 1019 | CG5869-RA | 182..595 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16302261..16302451 | 296..106 | 955 | 100 | Minus |
| 2L | 23513712 | 2L | 16302080..16302208 | 422..294 | 645 | 100 | Minus |
| 2L | 23513712 | 2L | 16302518..16302612 | 105..11 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:49:26 has no hits.
UFO06659.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:19 Download gff for
UFO06659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5869-RA | 176..593 | 2..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:01 Download gff for
UFO06659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5869-RA | 178..595 | 2..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:23 Download gff for
UFO06659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5869-RA | 178..595 | 2..422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:23 Download gff for
UFO06659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16302080..16302205 | 297..422 | 100 | <- | Minus |
| 2L | 16302261..16302451 | 106..296 | 100 | <- | Minus |
| 2L | 16302518..16302618 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:01 Download gff for
UFO06659.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16302080..16302205 | 297..422 | 100 | <- | Minus |
| arm_2L | 16302261..16302451 | 106..296 | 100 | <- | Minus |
| arm_2L | 16302518..16302618 | 1..105 | 96 | | Minus |
