UFO06660.5prime Sequence
1086 bp (973 high quality bases) assembled on 2009-08-24
> UFO06660.5prime
CAGTCGACATGAAATCGGTCACGTTCGTACTCTGCCTGCTCGTTCTGGGC
GCCCACTCGCTGCTGGTGTTCGCCGTGGATTGCGAGATCGGTGGGCATCA
GTTCAAGACCGGAGAGAAGTACACGCCGGAAGGTCGCTGCCTGCAGTACA
CCTGCCAGGCACCCAAACAGGTGACTGCCTTGGGATGCCCGGCCATCGCC
TCCTTGAAGCCCTGCAAAATGGAAGAGGATCTGAGCAAACCCTATCCCGG
CTGCTGTCCCAAGTTCAACTGCGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCA
ATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATC
TTGCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCACTCCAG
AGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTG
AACACTATCCCATATCACAGCTCACCGTCTTTCATTGCCATACGAATTCC
GATGAGCATTCATCAGCGGCAAGATGTGAATAAGCGGATAAACTTGTGCT
TATTTTTCTTACGTCTTAAAGCGTATATCAAGCTGAACGACTGCAAAGTA
CTGAGCACTGACTGATGCTCAAGTTCTTACATGACA
UFO06660.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp7-RA | 368 | CG32667-RA | 20..283 | 9..272 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11140001..11140110 | 184..75 | 550 | 100 | Minus |
| X | 23542271 | X | 11139847..11139935 | 272..184 | 445 | 100 | Minus |
| X | 23542271 | X | 11140178..11140244 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 214..299 | 823..906 | 127 | 64 | Plus |
UFO06660.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:18 Download gff for
UFO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32667-RA | 14..289 | 1..276 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:57 Download gff for
UFO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32667-RA | 14..289 | 1..276 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:04 Download gff for
UFO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp7-RA | 14..289 | 1..276 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:04 Download gff for
UFO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11139847..11139934 | 185..272 | 100 | <- | Minus |
| X | 11140001..11140109 | 76..184 | 100 | <- | Minus |
| X | 11140178..11140250 | 1..75 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:57 Download gff for
UFO06660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11033880..11033967 | 185..272 | 100 | <- | Minus |
| arm_X | 11034034..11034142 | 76..184 | 100 | <- | Minus |
| arm_X | 11034211..11034283 | 1..75 | 94 | | Minus |
