UFO06661.5prime Sequence
1078 bp (973 high quality bases) assembled on 2009-08-24
> UFO06661.5prime
CAGTCGACATGAAGTTTTTGATCCTCTTCATTGCCCTATTCGCCGCGGCC
GCTGCCCTACCTCAGTTTGGATTCGGCGGTGGATTCGGTGATCAGCAGCA
GCAGCAGCAAGGAGGATTTGGAGGTGGATTTGGTGATCAGCAGCAGCAGC
AAGGAGGATTTGGCGGTGGATTCGGAGGTGGATTCGGTGATCAGCAGCAG
CAGCAGCAAGGGGGATTTGGAGGTGGATTCGGAGGTGGATTCGGTGATCA
GCAGCAGCAACAGCAACAAGGCTGGGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACT
CCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTACACGG
TGACACTATCCCATATCACAGCTCACGTCTTTCATGCATACGAAATCGAT
GAGCATCATCAGCGGCAGATGTGATAAGCGATAAACTGTGCTTATTTTCT
TACGGTCTTTAAAGGCGTAAATCAGCTGACCGGCTGCTTAAGTACATGAC
ACTGACTGATGCTCGAAGGTCTCATGCA
UFO06661.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31775-RB | 371 | CG31775-RB | 39..306 | 8..275 | 1325 | 99.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 39..306 | 8..275 | 1325 | 99.6 | Plus |
CG42586-RB | 613 | CG42586-RB | 39..306 | 8..275 | 1325 | 99.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 145..297 | 69..209 | 415 | 85.6 | Plus |
CG31775-RA | 613 | CG31775-RA | 145..297 | 69..209 | 415 | 85.6 | Plus |
CG31775-RB | 371 | CG31775-RB | 100..240 | 114..266 | 400 | 85 | Plus |
CG31775-RA | 613 | CG31775-RA | 100..240 | 114..266 | 400 | 85 | Plus |
CG31775-RB | 371 | CG31775-RB | 198..260 | 68..130 | 300 | 98.4 | Plus |
CG31775-RA | 613 | CG31775-RA | 198..260 | 68..130 | 300 | 98.4 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..161 | 167..229 | 285 | 96.8 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..161 | 167..229 | 285 | 96.8 | Plus |
CG31775-RB | 371 | CG31775-RB | 99..141 | 224..266 | 185 | 95.3 | Plus |
CG31775-RB | 371 | CG31775-RB | 255..297 | 68..110 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 99..141 | 224..266 | 185 | 95.3 | Plus |
CG31775-RA | 613 | CG31775-RA | 255..297 | 68..110 | 185 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14737397..14737652 | 275..20 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 14741468..14741723 | 275..20 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 14737406..14737558 | 209..69 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14741477..14741629 | 209..69 | 365 | 85.6 | Minus |
2L | 23513712 | 2L | 14741534..14741674 | 266..114 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14737463..14737603 | 266..114 | 350 | 85 | Minus |
2L | 23513712 | 2L | 14737443..14737505 | 130..68 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14741514..14741576 | 130..68 | 300 | 98.4 | Minus |
2L | 23513712 | 2L | 14737542..14737604 | 229..167 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14741613..14741675 | 229..167 | 285 | 96.8 | Minus |
2L | 23513712 | 2L | 14737406..14737448 | 110..68 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14737562..14737604 | 266..224 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741477..14741519 | 110..68 | 185 | 95.3 | Minus |
2L | 23513712 | 2L | 14741633..14741675 | 266..224 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-28 20:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6807..6830 | 247..270 | 111 | 95.8 | Plus |
UFO06661.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:27 Download gff for
UFO06661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31775-RA | 30..306 | 1..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:33 Download gff for
UFO06661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 33..309 | 1..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:46 Download gff for
UFO06661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42586-RB | 33..309 | 1..279 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:03:46 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:44:33 has no hits.