UFO06662.5prime Sequence
1110 bp (999 high quality bases) assembled on 2009-08-24
> UFO06662.5prime
CAGTCGACATGAAATTCTTGGTGATCGTTTTTGTGGCCCTTATCGCCGTT
GCTTCCGCGCTTCCTCAATTCGGATATGGAGGATTCGGTGGATTCGGAGG
ATTCGGTGGCCAACAGCAGCAGCAAGAAGGATTCGGCGGTTTCGGAGGCT
TCGGAGAACAGCAACAGCAGCAGGAAAGCTTCGGTGGATTCGGCGGATTT
GGAGGAATCGAGCAGCAGCAGCAGCAGCAACAAGGAGGCTTCTTCGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCG
GAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCT
CATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCA
CGTCTTTCATGCCATACGAAATTCCGGATGAGCATTCATCAGCGGGCAGA
TGTGAATAAAGCCGGATAAAACTGTGCTTATTTTTCTTACGTCTTTAAAA
GCGTAATATCAGCTGACGTCTGATTATAGTACATGAGCACTGACTGAATG
CCCTCGAATGTTCTTTACGATGCAATTGGATATATCACGGTGCTATTCCA
GGATTTTTTC
UFO06662.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15282-RB | 383 | CG15282-RB | 78..314 | 9..245 | 1185 | 100 | Plus |
| CG15282-RC | 521 | CG15282-RC | 216..452 | 9..245 | 1185 | 100 | Plus |
| CG15282-RA | 563 | CG15282-RA | 78..314 | 9..245 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14712824..14713049 | 20..245 | 1130 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:56:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 814..881 | 123 | 68.1 | Plus |
UFO06662.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:26 Download gff for
UFO06662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15282-RA | 70..325 | 1..257 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:07 Download gff for
UFO06662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15282-RA | 70..325 | 1..257 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:10 Download gff for
UFO06662.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15282-RA | 70..325 | 1..257 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 19:42:10 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:27:07 has no hits.
