UFO06664.5prime Sequence
1102 bp (1004 high quality bases) assembled on 2009-08-24
> UFO06664.5prime
CAGTCGACATGACTGCCGTTCCACCCCCCTCCAACATCTCTACCCTAATG
CCATTGGAATTGGTGGACAAATGCATCGGTTCCCGCATCCACATTATCAT
GAAGAACGACAAGGAGATGGTGGGAACTCTCTTAGGATTCGATGACTTTG
TGAATATGCTCTTGGACGACGTAACGGAGTATGAAAATACCCCCGACGGC
CGCCGCATCACCAAACTGGATCAGATTCTGCTCAACGGGAACAATATCAC
AATGTTGGTGCCTGGCGGAGAGCTGGCGGAGGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT
TTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAAC
ATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACA
CGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGT
ATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGGAAAACGGTGT
AACAGGTGACACTATCCCATATCACAGCTCACGTCTTTCATGCATACGAA
ATCGATGAGCATCATCAGCGGCAGATGTGAATAAGCGATAAACTGTGCTT
ATTTTTCTTACGTCTTAAAAGCGTATATCAGCTGACGGTCTGTAAAGTAA
TGAGCACTGACTGAATGCTCAAATGTTCTTACGATGCATGGAAATATGCA
CG
UFO06664.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6610-RC | 520 | CG6610-RC | 103..377 | 7..281 | 1375 | 100 | Plus |
| CG6610-RB | 421 | CG6610-RB | 103..377 | 7..281 | 1375 | 100 | Plus |
| CG6610-RA | 586 | CG6610-RA | 103..377 | 7..281 | 1375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6075760..6075961 | 57..258 | 995 | 99.5 | Plus |
| 3L | 28110227 | 3L | 6075638..6075688 | 7..57 | 255 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..290 | 850..907 | 112 | 67.8 | Plus |
UFO06664.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:25 Download gff for
UFO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6610-RA | 97..386 | 1..289 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:18 Download gff for
UFO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6610-RA | 98..387 | 1..289 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:01 Download gff for
UFO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6610-RA | 98..387 | 1..289 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:01 Download gff for
UFO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6075633..6075688 | 1..57 | 94 | -> | Plus |
| 3L | 6075761..6075957 | 58..254 | 100 | -> | Plus |
| 3L | 6076023..6076049 | 255..281 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:18 Download gff for
UFO06664.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6068861..6069057 | 58..254 | 100 | -> | Plus |
| arm_3L | 6069123..6069149 | 255..281 | 100 | == | Plus |
| arm_3L | 6068733..6068788 | 1..57 | 94 | -> | Plus |
