UFO06665.5prime Sequence
1094 bp (989 high quality bases) assembled on 2009-08-24
> UFO06665.5prime
CAGTCGACATGTCCGCATCCGCTGCCCGAGGCTCCACATCGCTGCTGAAG
CGCGCCTGGAACGAGATTCCGGACATCGTCGGCGGATCCGCTTTGGCCCT
CGCCGGAATCGTTATGGCCACCATCGGAGTGGCCAACTACTATGCCAAGG
ACGGCGATAACCGACGCTACAAGCTCGGCTACGTTGTCTACCGCCACGAC
GATCCGCGCGCCCTGAAGGTGCGCAACGACGAGGATGACGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGA
GTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCA
GTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAA
CGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGC
GTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATT
GGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATC
GTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAA
AACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTT
TCATTGCCATACGAATTCCGATGAGCATTCATCAGCGGGCAAGAATGTGA
ATAAAGCCGATAAAACTTGTGCTTATTTTTTCTTTACGTCTTTAAAAGCG
TATATCCAGCTGAACGGTCTGGTTATAGTACATGAGCACTGACTGAATGC
CTCAATGTTCTTACATGCATGGAATATCACGTAATATCATGATT
UFO06665.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9034-RB | 481 | CG9034-RB | 156..386 | 9..239 | 1155 | 100 | Plus |
| CG9034-RA | 386 | CG9034-RA | 61..291 | 9..239 | 1155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9159609..9159839 | 239..9 | 1155 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 805..874 | 124 | 67.6 | Plus |
UFO06665.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:24 Download gff for
UFO06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9034-RA | 89..319 | 9..239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:17 Download gff for
UFO06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9034-RA | 61..291 | 9..239 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:58:12 Download gff for
UFO06665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9034-RA | 61..291 | 9..239 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 23:58:12 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 00:57:17 has no hits.
