UFO06668.5prime Sequence
1095 bp (969 high quality bases) assembled on 2009-08-24
> UFO06668.5prime
CAGTCGACATGACTGCCTGGAGAGCTGCCGGAATTACCTACATCCAATAC
TCCAACATCGCCGCTCGCATTTTGCGCGAGTCCTTGAAGACGGGACTGCG
TGCGGATGCCGCCAAGCGCGACGCGAGCCATGTGAAGTTCACTCCCTGGG
CAAATGGCAAGCCAGCTCAGCGTCAAACCCAATCGGAATCCGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAA
TCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATG
GAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGT
CTTTCATTGCCATACGAATTCCGGATGAGCATTCATCAGCGGGCAGATGT
GATAAAGGCCGGATAACTTGTGCTTATTTTTCTTTACGTCTTAAAAGCCG
TATATCCAGCTGACGGTCTGGTATAGTACATGAGCACTGACTGAAATGCC
TCAAATGTTCTTACGATGCATGGATATATCACGGGGCTTATCAGTGATTT
TTTTCTCATTAGCTTCTAGTCCTGAAAGATTCTAACTTCGTATAG
UFO06668.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sun-RA | 400 | CG9032-RA | 95..277 | 9..191 | 915 | 100 | Plus |
| sun-RB | 450 | CG9032-RB | 95..255 | 9..169 | 805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15848886..15849016 | 168..38 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 10122032..10122180 | 15..163 | 190 | 75.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 760..827 | 123 | 68.1 | Plus |
UFO06668.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:23 Download gff for
UFO06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sun-RA | 68..269 | 1..200 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:56 Download gff for
UFO06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sun-RA | 86..287 | 1..200 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:15 Download gff for
UFO06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sun-RA | 86..287 | 1..200 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:15 Download gff for
UFO06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15847982..15848004 | 169..191 | 100 | <- | Minus |
| X | 15848886..15849016 | 38..168 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:56 Download gff for
UFO06668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15742015..15742037 | 169..191 | 100 | <- | Minus |
| arm_X | 15742919..15743049 | 38..168 | 100 | <- | Minus |
