UFO06671.5prime Sequence
1048 bp (973 high quality bases) assembled on 2009-08-24
> UFO06671.5prime
CAGTCGACATGGGGGATTACGATTCCGATGATGAAAAATCACAGGTGGAG
AAGCTGCGCCACGCCAAAGTGCCGCGCGGAATGTTCGTGAGCGGCTGGGA
CGACGATGCCGACGAACTGATCGAGGAGGACAAGAACCCACAAAGCAGCA
TTGAACGCATGATTCTGTGGGCGGTGAACGAGAACCGCATCAGCGAGGTG
CGGGAAATCCTGAAATTGGACGCGGACACTGTGAACGCCAAGGATAACGA
CGGATACACGCCGCTGCACCGAGCTGCCTATAATAACTTTGTGGATATGG
CCAAGTTGCTGCTGCAGTACCATGCCAATCCCAACGCCCGCACGGAGCTG
GGATGGACGCCATTGCACTCCGCCTGCAAGTGGAACAATGCGGATTGCGC
CCATTTGCTGCTGCAGTTTGGCGCCGATGTAAATGCGGAATCCGACGGCA
AGCAGACGCCGCTTCACATAACCGCCACTGTGTCCAATTGTCGGAATACG
GCCACGGTCCTTCTGCTGGACCGATACATCCAGCCGCGCAAGGAGAACAA
CTCCGAGGAACTGGCCTCGGTGATTGCCCGTCGTACTGGCATGAGTTTTC
CCATTTTCGAGTCCGGCGAGGAAGCCTACGACTGCGAAACGGGACTGATA
GATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCT
GCACTCATCGCAGTACTGTTGTATCATTAGCATCCTGCGACATGCAGCAT
CACAAACGCATGATGACTGATCGCAGCGCATCAGCACTGTCGGCTTGCTT
AAACTGGCATGTGAACGGGGCGAGAGTTGCATTGGCCGTCATCAACTG
UFO06671.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)35Be-RA | 800 | CG4140-RA | 91..735 | 9..653 | 3120 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15006648..15007156 | 653..145 | 2470 | 99 | Minus |
| 2L | 23513712 | 2L | 15007205..15007341 | 145..9 | 655 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:19 has no hits.
UFO06671.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:22:09 Download gff for
UFO06671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4140-RA | 58..711 | 1..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:55 Download gff for
UFO06671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Be-RA | 85..738 | 1..657 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:22 Download gff for
UFO06671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)35Be-RA | 85..738 | 1..657 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:22 Download gff for
UFO06671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15006645..15007156 | 145..657 | 98 | <- | Minus |
| 2L | 15007206..15007347 | 1..144 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:55 Download gff for
UFO06671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15007206..15007347 | 1..144 | 95 | | Minus |
| arm_2L | 15006645..15007156 | 145..657 | 98 | <- | Minus |
