UFO06672.5prime Sequence
1104 bp (987 high quality bases) assembled on 2009-08-24
> UFO06672.5prime
CAGTCGACATGACCAATCGACTGGCCTTGCACCACATCCTGACCACCCAG
CTGCGAAGGGACTGGGAACAGGAGGAGAGCGCCAAGACCAGGCTGTCGCA
GCTGTCCAGGAGGGACAGGATCAAGGCCTCGCTAAGATCGAGTCAGTTGC
CAGGACGTTACCTGTTGCCCGACACCAGAAAGACCTACGACAATATGGTG
GCCAATATTCACTCGACCATGAAGTCGGTACGAGCACCACGAAGACCACG
GCCAACGGGGCCGCTGCCCACATCTGGAACTCCGAATCCAGTACCAGTAG
TTGCACCACCACTGCCATCGAAACTGGTGTCCAAGCAACCGCAACGCAAG
TCGGCGGGGCGCATCAAGGGTGGCGGCAACTCTTCGAAAGCGGACAGTGG
CCATGGCATTGCCATCAAATCATTGGCGAAGGTCAAGGCCTGCATCAACC
AGAAGCAGAAGAGATCGCGGGGCTTTGAGCAGCACAATCGCATCCGTGAA
GTCATCCAACAGAAGAAAGTGCTGGAGACCATGTTGCAGCAGCACAAGAA
GCTGCAAAGCGATCGACACACCATAGCGATGGATATCCAGCGAATGCGTG
CCGATCTGGACAGGATTCGCAACAAGCTGGACACCTCGCTGCAGAGCCTC
AACTCGACGCGCACCCTATTCAGTGCCGCCAACAAGGCGAGTCTCAGGAA
GTCGACCGCCCTGCAGAAGCCCACGCAAAACATGGTGACCTCCACCAATC
GCCGCTCGGGTGGCAAACGAAAGGGCCCGGACCGTTGCCATTCCGATGAA
CCGGCAAAGTGTGCTGACCAACAAGGGCCCTATTCTCAAACGAAAAGTTC
GGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTTGT
CATAATCATAATCATATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCGGCGGCAC
GGAGCGTTCTGAACAATCAGATGAAGTTCTGAGTCATACTGGATTCTATC
ACAGGAGTCCAAGCGAACTCGAATCCAATACGCCGCTGCCACTCATCGCG
AGTA
UFO06672.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7164-RB | 1236 | CG7164-RB | 170..1013 | 8..852 | 4140 | 99.4 | Plus |
| CG7164-RA | 1026 | CG7164-RA | 170..1013 | 8..852 | 4140 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7781912..7782537 | 226..852 | 3025 | 99.2 | Plus |
| 2L | 23513712 | 2L | 7781634..7781851 | 8..225 | 1090 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:52 has no hits.
UFO06672.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:28 Download gff for
UFO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 126..979 | 1..856 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:35 Download gff for
UFO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 164..1017 | 1..856 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:21 Download gff for
UFO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7164-RA | 164..1017 | 1..856 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:21 Download gff for
UFO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7781628..7781851 | 1..225 | 98 | -> | Plus |
| 2L | 7781912..7782541 | 226..856 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:35 Download gff for
UFO06672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7781628..7781851 | 1..225 | 98 | -> | Plus |
| arm_2L | 7781912..7782541 | 226..856 | 98 | == | Plus |
