UFO06673.5prime Sequence
1088 bp (986 high quality bases) assembled on 2009-08-24
> UFO06673.5prime
CAGTCGACATGCCACAGTCAGAGGGCGGCTATGTATCGCTGCCGGCCGTC
AATGGCAATGGCGGCGCCATCTATCAGTCGACCACAGAGCCCACGGCCCC
GCCCTCCGTTTTTGCGAGCGTGAAGCGGGCCATTGGCCAGGCCATCAAGT
CCTCGCCCACCGACAGCGAGGAGCTGCTCCGGTCGGACCGCCTGCCGGTC
ATCGTCGGCGGCTCCAGAGACCGCGACAAATCCGGTAAGACACTGACCAC
CAAGATGCCGTCAGCTCCAACACACACTGCCGAGGAGGCACATCTGCTGG
GCACCATGCCCGTTGATCCCATGGATGACATCGAACTGCGCTCCGTGCAG
CTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCCTGCGAACAGCG
ACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCATACAGGGCGATA
CGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCCTCAACTACGCC
ACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGAGGTCTGCTGGA
GAACTTCTGTGTTTACCATGTGACTGCTCCTGGCCAGGAGGAGGGTGCAC
CCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATGATCTGGCCGCC
CAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCGGTGATTGGTTT
CGGCGTTGGTGCCGGGGCGAATATTCTGGCACGTTTCGCTCACGCCCATC
CGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGTCCACGCAGTCG
GGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGCTTCTTGCGCAC
CAAGGGCATGACACAGGCGTGATCGATTATCTGATGTGGCACACTTCGGA
CGCAATCCGGAGGAGCGCAATCACGACCTGTGCAGATGTACAGCAGCACT
TCGAGCGTGGCGTTATCGACATCTTGCATGCTGATCACGCGTACATCATC
GCACGACTGCATCTGGGCGCGCACTCCGCCAAGACTCCGGGCAGCGAACG
GCCGGCCACCACGCCTGAGAATGCGGTGAATCATAATT
UFO06673.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RC | 2193 | CG15669-RC | 602..1671 | 8..1064 | 4870 | 97.9 | Plus |
| MESK2-RE | 2619 | CG15669-RE | 575..1644 | 8..1064 | 4870 | 97.9 | Plus |
| MESK2-RF | 2425 | CG15669-RF | 381..1450 | 8..1064 | 4870 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511756 | 617..965 | 1550 | 98.6 | Plus |
| 2R | 25286936 | 2R | 21507513..21507722 | 8..217 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 21510866..21511060 | 301..495 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 496..616 | 590 | 99.2 | Plus |
| 2R | 25286936 | 2R | 21510115..21510201 | 215..301 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:04:52 has no hits.
UFO06673.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:18 Download gff for
UFO06673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..1468 | 8..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:19 Download gff for
UFO06673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..1468 | 8..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:18 Download gff for
UFO06673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RF | 381..1468 | 8..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:18 Download gff for
UFO06673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21510867..21511060 | 302..495 | 100 | -> | Plus |
| 2R | 21511123..21511243 | 496..616 | 99 | -> | Plus |
| 2R | 21507513..21507722 | 8..217 | 100 | -> | Plus |
| 2R | 21510118..21510201 | 218..301 | 100 | -> | Plus |
| 2R | 21511404..21511882 | 617..1083 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:19 Download gff for
UFO06673.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17395018..17395227 | 8..217 | 100 | -> | Plus |
| arm_2R | 17397623..17397706 | 218..301 | 100 | -> | Plus |
| arm_2R | 17398372..17398565 | 302..495 | 100 | -> | Plus |
| arm_2R | 17398628..17398748 | 496..616 | 99 | -> | Plus |
| arm_2R | 17398909..17399387 | 617..1083 | 94 | | Plus |
