UFO06674.5prime Sequence
1115 bp (1021 high quality bases) assembled on 2009-08-24
> UFO06674.5prime
CAGTCGACATGAAGCATTGGCCCTTCGAGGTGTTCGCCGAGAACGGAAAG
CCACGCATCCGTGTGGAGTACAAGGGCGAACGGAAGAGCTTCTATCCGGA
GGAGGTGTCCTCGATGGTGCTGACGAAAATGCGAGAGACCGCGGAGGCCT
ACCTGGGCGGCACGGTGACAGATGCGGTTGTCACCGTTCCGGCGTACTTC
AACGACTCCCAGCGCCAGGCCACCAAGGATGCGGGTGCCATTGCAGGATT
GAATGTCCTTCGCATTATCAACGAACCAACGGCGGCGGCCATAGCCTACG
GCTTGGATAAGCAGGGCACCAGCGAACGAAATGTCTTGATCTTCGACCTT
GGTGGTGGCACCTTCGACGTTTCTGTGCTGACCATCGAGGATGGCATCTT
CGAGGTGAAGGCAACCGCTGGCGACACCCATCTCGGCGGCGAGGACTTCG
ATAACCGGCTGGTGAACCACTTCGTACAGGAGTTTCAGCGCAAACATAAG
AAGGATCTGGGCCAGAACAAGCGGGCTTTGAGGCGACTCCGAACCGCGTG
TGAAAGGGCAAAACGCACCCTCTCCTCATCCACGCAGGCCAGCATCGAGA
TCGATTCCCTCTTTGAGGGCGTCGACTTCTACACCTCGGTGACACGGGCC
CGCTTCGAAGAGTTGAATGGCGATCTGTTCCGAGGTACCATGGAACCAGT
GGCCAAGGCGCTGCGTGATGCCAAGATGGACAAGGGCCAGATACACGACA
TCGTCCTTGTGGGTGGCTCCACCAGGATTCCCAAAGTGCAACGTCTGCTG
CAGGACTTTTTCAACGGCAAGGAACTAAACAAGTCCATCAATCCCGATGA
GGCGGTTGCCTATGGTGCTGCAGTGCAGGCGGCCATCCTCCATGGCGATA
ATCGGAGCAGTGCAGATCTGCTCTGCTGGATGTCACTCTCTGTCTCTGGG
TATTGAGACTGCTGGCGGATGATGACTACGCTGATAGAGACACCACCATA
CCCACAGCAACGCAAATCTTACACTTATGCGACACAGCCAGGTGTGCTTA
TCAGTGTTCGAGGCGAGCGGCCATGACCGAATACACAGCTGATAGTTGAC
TCCGCATTCCACGGT
UFO06674.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsc70-1-RD | 2543 | CG8937-RD | 743..1834 | 1..1070 | 4935 | 97.9 | Plus |
| Hsc70-1-RA | 2168 | CG8937-RA | 368..1459 | 1..1070 | 4935 | 97.9 | Plus |
| Hsc70-1-RC | 2611 | CG8937-RC | 811..1902 | 1..1070 | 4935 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13975967..13976952 | 6..985 | 4615 | 99.3 | Plus |
| 3R | 32079331 | 3R | 15244615..15245507 | 6..898 | 1345 | 76.7 | Plus |
| 3R | 32079331 | 3R | 11955156..11956043 | 890..6 | 850 | 73.3 | Minus |
| 3R | 32079331 | 3R | 11959035..11959922 | 6..890 | 850 | 73.3 | Plus |
| 3R | 32079331 | 3R | 12506281..12507168 | 6..890 | 835 | 73.2 | Plus |
| 3R | 32079331 | 3R | 12509564..12510451 | 6..890 | 835 | 73.2 | Plus |
| 3R | 32079331 | 3R | 12466424..12467311 | 890..6 | 820 | 73.1 | Minus |
| 3R | 32079331 | 3R | 12502998..12503885 | 6..890 | 820 | 73.1 | Plus |
| 3R | 32079331 | 3R | 24055975..24056858 | 886..6 | 665 | 71.9 | Minus |
| 3R | 32079331 | 3R | 13045666..13046126 | 6..463 | 590 | 75.7 | Plus |
| X | 23542271 | X | 11803941..11804118 | 315..138 | 275 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:35:11 has no hits.
UFO06674.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:17 Download gff for
UFO06674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-1-RD | 93..1192 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:15 Download gff for
UFO06674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-1-RC | 811..1910 | 1..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:00 Download gff for
UFO06674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsc70-1-RC | 811..1910 | 1..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:00 Download gff for
UFO06674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13975961..13977060 | 1..1077 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:15 Download gff for
UFO06674.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13969061..13970160 | 1..1077 | 97 | | Plus |
