UFO06675.5prime Sequence
1081 bp (963 high quality bases) assembled on 2009-08-24
> UFO06675.5prime
CAGTCGACATGATGCGCATGTTCCGTTACACCAACACATTGCAGCGTACT
GCAAAGATCAGTCACGTCCTGTGGGCCCGTAACTATGCAAAGGATGTTAG
GTTCGGGCCGGAGGTGAGGGCCATGATGCTGCAGGGAGTGGACGTGCTGG
CGGATGCCGTGGCCGTGACCATGGGACCAAAGGGACGCAACGTGATCATC
GAGCAGAGCTGGGGATCGCCAAAGATTACCAAGGACGGCGTGACGGTGGC
CAAGTCGATTGCCCTCAAGGACAAGTTCCAGAATATCGGCGCCAAACTGG
TGCAGGATGTGGCGAACAACACGAACGAGGAGGCAGGTGATGGCACCACC
ACGGCCACCGTTCTGGCCCGCGCCATTGCCAAGGAGGGATTCGAGAAGAT
TTCACGGGGTGCCAGTCCGGTGGAGATCCGCCGCGGAGTTATGCTAGCCA
TCGAGACGGTCAAGGACAACCTTCGTCGGTTGTCCCGGCCAGTTAACACG
CCCGAGGAGATCTGCCAGGTGGCGACGATCTCTGCGAACGGCGACAAGTC
GGTGGGAAACCTCATCAGCGAGGCCATCAAGAAGGTGGGTCGAGACGGCG
TTATCACTGTCAAGGATGGCAAGACCCTTTGCGACGAACTGGAGGTGATC
GAGGGCATGAAATTTGACCGTGGTTACATTTCGCCTTACTTTATTAACAC
CTCCAAGGGAGCAAAGGTGGAGTTCCAGGACGCGCTTCTCCTCTTTTGCG
AGAAGAAAATCAAGTCGGCACCTAGCATCGTGCCTGCCCTGGAGTTGGCC
AACGCTCAGCGCAAGCCCTTGGTCATTATCGCTGAGGACTTGGAGGCGGA
GGCACTCAGCACTCTGGTGGTGAACCGCCTAAAGGTGGGCCTCCAAGTGT
GCGCGTGAAGCACCCGGGTTTGGTGACATCGCAAGGAGAATCTGATGACA
TGTGTGGCCACCGGTGGATCGTGTTGAGACGAGCATATGTACGCTCGAGA
TTCAGATGACGACTTTGACGTGTAGCAAGTAGTAGTCTCGAAGACGAACC
ATGCTGCCAAGCAGACGAAGCCAAGTGGAAA
UFO06675.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp60C-RC | 2093 | CG7235-RC | 196..1275 | 1..1057 | 4780 | 97.4 | Plus |
| Hsp60C-RA | 2162 | CG7235-RA | 265..1344 | 1..1057 | 4780 | 97.4 | Plus |
| Hsp60C-RB | 2029 | CG7235-RB | 134..1211 | 3..1057 | 4770 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5668943..5669890 | 3..947 | 4560 | 99.5 | Plus |
| X | 23542271 | X | 11110103..11110919 | 83..899 | 1805 | 81.4 | Plus |
| 2L | 23513712 | 2L | 728599..728929 | 118..448 | 425 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:35:07 has no hits.
UFO06675.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:16 Download gff for
UFO06675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RC | 196..1186 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:13 Download gff for
UFO06675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 265..1255 | 1..982 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:58 Download gff for
UFO06675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp60C-RA | 265..1255 | 1..982 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:58 Download gff for
UFO06675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5668940..5669931 | 1..982 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:13 Download gff for
UFO06675.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5668940..5669931 | 1..982 | 98 | | Plus |
