UFO06676.5prime Sequence
1091 bp (1006 high quality bases) assembled on 2009-08-24
> UFO06676.5prime
CAGTCGACATGAAGCTATCCGAGGGAGTTAAGGATCGTTTGGGATTTGTG
GTTGGAGTCGTCCAGACTGGATTCCACTGGGGATTCGTGCCTCTTGTGCT
GTATTTGGGATTTATGAAGGGAGCTGAGCCTGGCATGCCGCCTCTGAACC
TTTTCAGTCTGTTATGGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAAT
AAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTT
GCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGA
GCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGA
ACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGAATTCC
AGATGAGCATTCATCAGCGGGCAGATGTGAATAAAGGCCGGATAAAACTT
GTGCTTATTTTTCTTTACGGTCTTTAAAAGCCGTATATCCAGCTGACGGT
CTGGTATAGGTACATTGAGCACTGACTGAATGCCTCAAATGTTCTTTACG
ATGCCATTGGATATATCACGGTGGTTATCCAGTGATTTTTTTTCTCCATT
AGCTCTAGCTCCTGAAGATCTAACCTTCGTTAGCAACTACG
UFO06676.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tom7-RB | 539 | CG8226-RB | 195..360 | 5..170 | 815 | 99.4 | Plus |
| Tom7-RA | 355 | CG8226-RA | 73..238 | 5..170 | 815 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8951789..8951893 | 5..109 | 510 | 99 | Plus |
| 2R | 25286936 | 2R | 8952001..8952063 | 108..170 | 315 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..299 | 736..805 | 124 | 67.6 | Plus |
UFO06676.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:26:16 Download gff for
UFO06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom7-RA | 97..270 | 1..174 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:11 Download gff for
UFO06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom7-RA | 68..241 | 1..174 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:57 Download gff for
UFO06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tom7-RA | 68..241 | 1..174 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:57 Download gff for
UFO06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8951784..8951892 | 1..108 | 97 | -> | Plus |
| 2R | 8952002..8952063 | 109..170 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:11 Download gff for
UFO06676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4839289..4839397 | 1..108 | 97 | -> | Plus |
| arm_2R | 4839507..4839568 | 109..170 | 100 | == | Plus |
